LOC118964529


Basic Information

Item Value
gene id LOC118964529
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56211738 ~ 56214599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051586.1
TGGCGCCCTCGAGAGCCAGAGAGCGGGAGCGCTAAGCAGGTGTGACAGTTCCGGTGTGTTGGTTTTTggtcactggttatttggacaaaACACATTTTAGCAGAGAGGGGCCCTGAAGCCCCCCAGCCATTGCCATACAGTCTGCTTTTGTTGAGGCTGGAACACCAACCCACCTCAGCGCTCTGGGGCCCCACTTGGGGCCCTCAGCGCACACCAAGACCAGGAAGATGGATGTGTGATTGGAACGTTTGGCTGAGACGCATGGCATACTGCAACACGCCTTTGCCGAAGGAAAACGTGTTGGCTTCTCTAAGGATTAAGGTTCTTCCGTGCTATCGCTTCCTGTCCATGCCTGCGAcagcacgtgtgtgtttgtgcacgctGATGCGACGTGTGTGTCTCGAAAAGCTGGACTCCGTACACGTGGTCACCACCCTCACAGATAACTTTGACCTCATTTGACCCAATGGTTTCAATTAGTACCATCTGAGGCTAATTTCCATCCAAAtcttcatgcgaatattctaaaatccccATGAAGACAATATACAccttttcccaccagagatgtttccatcaaattgtcTTGTTGCAGAGAACTGAGCGTGATGATGTAGTGCACTTACAAAATAACTTGTgcagttaaatgggtttccattgcattttcaactctaatTATGGTTTTGTAAGAAGAACTCTTGCTTTACATAGCGaatctctggtcttggcacgtgctctctagccaacagctcgcagataaaTTGCGGGTATAGGCTACTTATTTAAAACTTATTTCATCTAGCCTAATACACTGTATGCTTTCCCTAGTCGTAGTGGGATGACCATATAATATCATTGAGTGTTTTCAAGTTTACTTCAATGTgttggttattatatcaatatttcaatgtttccaccaccatttcttgCGTCATATATTTTACAGATATAATATCCCACCTTGTCGAGCGTGTTTTGTTTTGGAAGGTTTACCAACAAATGTgttgtttccatcaggcctgtcttGAAATGTTTTATCCGGCATGTACTTTACttacataaaaaggttggatggaaacttgGTTATAAAAGCACTTCAATTAATTAACTGTCCATTAAAACCTCTTCAAGAGCACCAGCTGCAAGAAGGGGGAAAGCTCCTACAGTATAACTCTCAGGGAACATGTCACATGCAATCATACTAAAGCACATTTGTAATTTAGAAATGAACCCGGTACTTTTGTAATACCTCAGGAGACAGTCTTTTTTAGTTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051586.1 True 1278 mRNA 0.43 3 56211738 56214599

Neighbor

gene id symbol gene type direction distance location
LOC110524086 LOC106613573 coding downstream 75162 56105602 ~ 56136576 (-)
nphs2 LOC106613567 coding downstream 336346 55871200 ~ 55875392 (-)
LOC110524078 nfia coding downstream 485545 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 723771 55268446 ~ 55489840 (-)
LOC118964623 NA coding downstream 961775 55248133 ~ 55250837 (-)
LOC110524088 LOC106613575 coding upstream 26132 56240731 ~ 56383335 (-)
LOC110524089 LOC106613577 coding upstream 241516 56456115 ~ 56459513 (-)
LOC110524090 LOC106613576 coding upstream 246180 56460779 ~ 56485866 (-)
LOC118964625 NA coding upstream 287240 56501839 ~ 56505438 (-)
LOC118964624 NA coding upstream 295868 56510467 ~ 56546694 (-)
G417771 NA non-coding downstream 90129 56041480 ~ 56121609 (-)
G417755 NA non-coding downstream 204627 55999872 ~ 56007111 (-)
G417650 NA non-coding downstream 290081 55836424 ~ 55921657 (-)
G417609 rab3b non-coding downstream 363681 55793584 ~ 55848057 (-)
G417615 LOC106613563 non-coding downstream 424524 55786961 ~ 55787214 (-)
G418505 NA non-coding upstream 4146 56218745 ~ 56218980 (-)
G418584 NA non-coding upstream 196474 56411073 ~ 56411429 (-)
G418590 NA non-coding upstream 207739 56422338 ~ 56422619 (-)
G418599 NA non-coding upstream 221392 56435991 ~ 56436467 (-)
G418617 NA non-coding upstream 276149 56490748 ~ 56543373 (-)
G417527 NA other downstream 602008 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1051471 55123617 ~ 55181458 (-)
G416110 NA other downstream 1825510 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2206065 54002448 ~ 54005673 (-)
G415420 NA other downstream 2318832 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 494199 56703896 ~ 56711499 (-)
G418830 NA other upstream 619427 56834026 ~ 56834595 (-)
G419603 NA other upstream 1396460 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1405455 57612040 ~ 57627128 (-)
G419714 NA other upstream 1485146 57699745 ~ 57705936 (-)

Expression


Co-expression Network