wdr18 (LOC106613619)


Basic Information

Item Value
gene id wdr18
gene name LOC106613619
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57771636 ~ 57862459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977949.1
CATGCGTTGAGTTCCTTTACTTCCAAAACAACACGCGTGCTGTTCCAAGATGTCCGCGCCTATGGAAATAGTTCTGAGTGCCGATTCGGCTGGACAGCTATGGAACTGTGCCGTTTTGGAACTCCATTCGGGCACAAATCTCTTGGCCTATCGAGGTGGCAATACTTCTTCGAGGTCACTCACAGTTTTGAATGGAGAGTACATCCTCGGAGCCCAACTCGGGAAAAACTTCATCAACGTGTGGGAAATCCAGAGAAAGgATCAGCTGCAGCAGAAAATTGTGTGCCCTGGGATTGTGACATGCTTGACTGCATCCCCCAATGGCCTGTACTTGGTGGCAGGCATTGCTGATGCCATCTACTTATGGGAGGTTTCCTCTGGGAATTTGCTGGCCATCTTGAGCCGCCATTACCAAGACCTGACCTGCCTACGCTTCAGTGACGACAGCAGCCATTTCATCTCAGGAGGCAAAGACAACCTGGCACTGGTCTGGAGTCTAGCCAGTGTGGTGCAGCTGGATCCGTCACACACCCCTGAGCCTCGTCATGTCCTGTCCCGTCATTCTCTCCCCATCACCGACATCCACTGTGGCCTGATGGGACCCCAGGCTCGAGTAGCTACTGCATCCCTGGACCAGACAGTCAAGCTTTGGGAGCTATCCTCTGGCGAGATGCTCCTGTCTGTTCTTTTTGACGTAGGCATCATGTCTGTGACTCTTGACCCCTGCGAGTACTACCTCTTCTGCGGTGGCAGTGACGGCGGTATATTTCAGGTGTCCCTCTGTAGCCAGAGCTTAAGTCGGGATAAGACTTTCCAGTCGGACAACGAGGGCAACCAGGTTTTTAAAGGACACAGGAACCTAGtgacatgtctgtctgtgtctatggATGGCACTCTCCTCCTCTCGGGCTCCCACGATGAGACCATACGACTGTGGGACATCCAGAGCAAGCAGAGCGTCCGCAGCATCAACCACAAAGgTCCAGTCACAAATGCCCTCATCATCCCTGCCCCTGCCAACATGTTCCTGCCTGACAGCCGCCCGGGCATACCCCTGCCCCGCTTCAGCCGCCACCTCAACCCCTCAGAACAGGGCGAGGGCGTGGAGACCGGAGGAGTGTGCCTGCGCCTGGCCCCCCACACCCAGGCCCAAAAGGAGACCTATTTGGAGAAAGCAGACAAACTCTACTCCATCATGAGTGCCGTAACAGACAAGAGTGTGTTTGGTGATGGCGAGAACACCAAGGTGCGTGTGTCGGAGCTGGAGGAGGAAGTGAGAACGCTGAAGAAGGTTAACAAGGACCTGTACGACTTCTCCACACAGCTCCTCACCAAGCCCAGCTAGAGAAGAGCCACCACCCCTGGCCACGGCTCCCCCATCCCACCAGCAGGGACCCTACTAGGGGGAGGGAAGACACTGCAAGCCCCCCCTCACTACAGACCGGTAGGCTAGGGAAATATAAGTTAGTGTGTGTCATTCATAGTGTTTGTTTTGTAAGGGAGAGTGTATGTTCAGCAGGACTTCAGGTGTTAAAGTTATACCATGGACCGCATTGCTTGTATCATGATCCCTCGCCATATTTAGGATAAAGGAGTTAATTTAACATGAAAAAAAAGTGCTCACCTTGTTTGTGCGACATGTTCAATGTTAGCCACAGGCTACTTGCAGTAGTCAAGTGCAGCCAGATAGAGCGACATAATTGATCTTAGCGCTATATTGACGTCCCTTGACCTCCTCAACTCGCAGCCCTGTTCCTTCACACTCATCACCACTGCCTATAAGGCCAAAAATCCCATCAGCCAAAAATCGGTGTAACAGTATCCAGTTAGTGCCCTCTGACCTTTCATCCTTTTTGTAATCTGGCTAACCTCAGATTCCTGCATTATCCTCtcctttttattttcatttttgttTACCTCGGCTTGGCCAAGTTCTATAGCATTCAACCAGTTAATAGATTCTAAGAATTTATGTGACAAGGACATGATGTGCACCCAGGTGTGTTTGGCTTAGCATCGATGAGGCTGGTGTTAATTTCAGTCACCCAATAGGTATGACCACCATGGTTCATAGGTCCCCTTCACCTTCTGTCAAGCAAAACTGTTTTCCCATTAGCAATATGCACATACTCTGTGTTAACCTGTTTGGCTAAAAACAGCTCACGGCAGGAATATCTCAAAGAAAATGGTGgtgttaaaaaaaacaatacGGAAGAGTAGAGGAATATGTTTGATTAACCCTGAGGAACTAGCCTGAAGACTGTGTACAGTTTTTCTGTGCCTGTAGCAATCATGGATTTGGTTGTGCAGTGCCCAGCAACGCTATACAACTGCAGAATCAGTTTTCAGAATCCTCCAGAAATCGCTCTTCCTCTCATCACTGCTAATTCTCCACCCGGGGCACTAAATTAGAGGCAGCGCCATAGAAATAGTGGTTGATTTTCGTCTTTTTCTCATTTGCCTGCTTTGATGAGATCAGGACAATGTGTGTGCCTCTTTGGTAGAGAAGAGGGAACTGATAAGGACAGCAGCCCTCCTGTCCAGAGAGAGCCATGGCTTTAGAACAGGGATTGGCAACTCTCCTTTTGTAGGCCCGTAGTTGTAAAAAATAATCTCAATTggggtctcaatttactgttaagagtcagaatagtagaatacataaAGTACCATTTCAAAATGTGGTTTTGCATGAGCAGTTTTCCTCttttgtcagtcactgacagtcacacaattagcccatgtcagctaaaaatTGGATTGGTAAATTAGTCCAGCCAGCTATATAAACGTGTTCTAATCATAGTTGATTTAACAACCGGAGGGCCCCcctttgattttgttagtcattctaactcagatatcatattagaAACTGCAAACATTTGTATAGCAACTATGGCaacgtgtagaattgcaggaaattagctgtaaaactgccaATTTTTCTCCGCTCCATGGCAAAATTAATAGAATTGCATTACATTGGGAAGTAATTGCTATGCCCcacggcaaaatgtgtagaattgcaggaaattaactctaAAACGTCAATGTTTTGTCTCTGGTGTCAAGGGAGGCCTGCAAAAATATTTTGATTGCAAGGTAGGCAGGGACCCTTAACACAATTccacttagggcccccaaaaggctaagGCCGGCTcttgactgcatgtgtgggtatggatgtgggtacacaGACCCACGAGCCACTGCGGCCTCTCATggtgagttcagatttttttgggACCCCCATCAGTTGCCCATCCCAGCTTTAGAACTTCTAGAGCGACTTACACGAAACCCAACATTGAATCCAATTAACTCACCGTTGGGGGGGGGCAGCACGTGAGATGGCGCTTCTGAGGATTGGAAGAGTGAAGTGTTCAGTGTGGGGGATTAATTGTTTTGTTCCtctaataaagacaaacagaCCAACTGGATTTGtactttttttgtgtttttgtatgCTTGTGTTTTTGTACCTTTCTGAAATCATgggaaataaaaacaaaatatgcACA
>XM_036977950.1
CATGCGTTGAGTTCCTTTACTTCCAAAACAACACGCGTGCTGTTCCAAGATGTCCGCGCCTATGGAAATAGTTCTGAGTGCCGATTCGGCTGGACAGCTATGGAACTGTGCCGTTTTGGAACTCCATTCGGGCACAAATCTCTTGGCCTATCGAGGTGGCAATACTTCTTCGAGGTCACTCACAGTTTTGAATGGAGAGTACATCCTCGGAGCCCAACTCGGGAAAAACTTCATCAACGTGTGGGAAATCCAGAGAAAGgATCAGCTGCAGCAGAAAATTGTGTGCCCTGGGATTGTGACATGCTTGACTGCATCCCCCAATGGCCTGTACTTGGTGGCAGGCATTGCTGATGCCATCTACTTATGGGAGGTTTCCTCTGGGAATTTGCTGGCCATCTTGAGCCGCCATTACCAAGACCTGACCTGCCTACGCTTCAGTGACGACAGCAGCCATTTCATCTCAGGAGGCAAAGACAACCTGGCACTGGTCTGGAGTCTAGCCAGTGTGGTGCAGCTGGATCCGTCACACACCCCTGAGCCTCGTCATGTCCTGTCCCGTCATTCTCTCCCCATCACCGACATCCACTGTGGCCTGATGGGACCCCAGGCTCGAGTAGCTACTGCATCCCTGGACCAGACAGTCAAGAGCTTAAGTCGGGATAAGACTTTCCAGTCGGACAACGAGGGCAACCAGGTTTTTAAAGGACACAGGAACCTAGtgacatgtctgtctgtgtctatggATGGCACTCTCCTCCTCTCGGGCTCCCACGATGAGACCATACGACTGTGGGACATCCAGAGCAAGCAGAGCGTCCGCAGCATCAACCACAAAGgTCCAGTCACAAATGCCCTCATCATCCCTGCCCCTGCCAACATGTTCCTGCCTGACAGCCGCCCGGGCATACCCCTGCCCCGCTTCAGCCGCCACCTCAACCCCTCAGAACAGGGCGAGGGCGTGGAGACCGGAGGAGTGTGCCTGCGCCTGGCCCCCCACACCCAGGCCCAAAAGGAGACCTATTTGGAGAAAGCAGACAAACTCTACTCCATCATGAGTGCCGTAACAGACAAGAGTGTGTTTGGTGATGGCGAGAACACCAAGGTGCGTGTGTCGGAGCTGGAGGAGGAAGTGAGAACGCTGAAGAAGGTTAACAAGGACCTGTACGACTTCTCCACACAGCTCCTCACCAAGCCCAGCTAGAGAAGAGCCACCACCCCTGGCCACGGCTCCCCCATCCCACCAGCAGGGACCCTACTAGGGGGAGGGAAGACACTGCAAGCCCCCCCTCACTACAGACCGGTAGGCTAGGGAAATATAAGTTAGTGTGTGTCATTCATAGTGTTTGTTTTGTAAGGGAGAGTGTATGTTCAGCAGGACTTCAGGTGTTAAAGTTATACCATGGACCGCATTGCTTGTATCATGATCCCTCGCCATATTTAGGATAAAGGAGTTAATTTAACATGAAAAAAAAGTGCTCACCTTGTTTGTGCGACATGTTCAATGTTAGCCACAGGCTACTTGCAGTAGTCAAGTGCAGCCAGATAGAGCGACATAATTGATCTTAGCGCTATATTGACGTCCCTTGACCTCCTCAACTCGCAGCCCTGTTCCTTCACACTCATCACCACTGCCTATAAGGCCAAAAATCCCATCAGCCAAAAATCGGTGTAACAGTATCCAGTTAGTGCCCTCTGACCTTTCATCCTTTTTGTAATCTGGCTAACCTCAGATTCCTGCATTATCCTCtcctttttattttcatttttgttTACCTCGGCTTGGCCAAGTTCTATAGCATTCAACCAGTTAATAGATTCTAAGAATTTATGTGACAAGGACATGATGTGCACCCAGGTGTGTTTGGCTTAGCATCGATGAGGCTGGTGTTAATTTCAGTCACCCAATAGGTATGACCACCATGGTTCATAGGTCCCCTTCACCTTCTGTCAAGCAAAACTGTTTTCCCATTAGCAATATGCACATACTCTGTGTTAACCTGTTTGGCTAAAAACAGCTCACGGCAGGAATATCTCAAAGAAAATGGTGgtgttaaaaaaaacaatacGGAAGAGTAGAGGAATATGTTTGATTAACCCTGAGGAACTAGCCTGAAGACTGTGTACAGTTTTTCTGTGCCTGTAGCAATCATGGATTTGGTTGTGCAGTGCCCAGCAACGCTATACAACTGCAGAATCAGTTTTCAGAATCCTCCAGAAATCGCTCTTCCTCTCATCACTGCTAATTCTCCACCCGGGGCACTAAATTAGAGGCAGCGCCATAGAAATAGTGGTTGATTTTCGTCTTTTTCTCATTTGCCTGCTTTGATGAGATCAGGACAATGTGTGTGCCTCTTTGGTAGAGAAGAGGGAACTGATAAGGACAGCAGCCCTCCTGTCCAGAGAGAGCCATGGCTTTAGAACAGGGATTGGCAACTCTCCTTTTGTAGGCCCGTAGTTGTAAAAAATAATCTCAATTggggtctcaatttactgttaagagtcagaatagtagaatacataaAGTACCATTTCAAAATGTGGTTTTGCATGAGCAGTTTTCCTCttttgtcagtcactgacagtcacacaattagcccatgtcagctaaaaatTGGATTGGTAAATTAGTCCAGCCAGCTATATAAACGTGTTCTAATCATAGTTGATTTAACAACCGGAGGGCCCCcctttgattttgttagtcattctaactcagatatcatattagaAACTGCAAACATTTGTATAGCAACTATGGCaacgtgtagaattgcaggaaattagctgtaaaactgccaATTTTTCTCCGCTCCATGGCAAAATTAATAGAATTGCATTACATTGGGAAGTAATTGCTATGCCCcacggcaaaatgtgtagaattgcaggaaattaactctaAAACGTCAATGTTTTGTCTCTGGTGTCAAGGGAGGCCTGCAAAAATATTTTGATTGCAAGGTAGGCAGGGACCCTTAACACAATTccacttagggcccccaaaaggctaagGCCGGCTcttgactgcatgtgtgggtatggatgtgggtacacaGACCCACGAGCCACTGCGGCCTCTCATggtgagttcagatttttttgggACCCCCATCAGTTGCCCATCCCAGCTTTAGAACTTCTAGAGCGACTTACACGAAACCCAACATTGAATCCAATTAACTCACCGTTGGGGGGGGGCAGCACGTGAGATGGCGCTTCTGAGGATTGGAAGAGTGAAGTGTTCAGTGTGGGGGATTAATTGTTTTGTTCCtctaataaagacaaacagaCCAACTGGATTTGtactttttttgtgtttttgtatgCTTGTGTTTTTGTACCTTTCTGAAATCATgggaaataaaaacaaaatatgcACA

Function

NR:

description
WD repeat-containing protein 18

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K14829 IPI3; pre-rRNA-processing protein IPI3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977949.1 False 3524 mRNA 0.48 10 57771636 57862459
XM_036977950.1 True 3380 mRNA 0.47 9 57771636 57862459

Neighbor

gene id symbol gene type direction distance location
grin3bb LOC106613616 coding downstream 20844 57641220 ~ 57750792 (-)
LOC110524128 LOC107602773 coding downstream 144508 57612040 ~ 57627128 (-)
plppr3b LOC106613613 coding downstream 166108 57586885 ~ 57605528 (-)
LOC110524123 LOC106613612 coding downstream 233724 57460164 ~ 57537912 (-)
LOC110524122 LOC106613611 coding downstream 312135 57444176 ~ 57459501 (-)
LOC110524131 LOC106613618 coding upstream 4103 57866562 ~ 57874864 (-)
LOC110524132 LOC106613620 coding upstream 13869 57876328 ~ 57881714 (-)
LOC110524135 arrdc2 coding upstream 127286 57989745 ~ 57998440 (-)
LOC110522874 NA coding upstream 140125 58002584 ~ 58014660 (-)
homer3b LOC106613626 coding upstream 171213 58033672 ~ 58081875 (-)
G419736 NA non-coding downstream 45751 57725593 ~ 57725885 (-)
G419726 NA non-coding downstream 54883 57716535 ~ 57716753 (-)
G419719 NA non-coding downstream 64941 57706377 ~ 57706695 (-)
G419712 NA non-coding downstream 77388 57693939 ~ 57694248 (-)
G419702 NA non-coding downstream 88071 57683331 ~ 57683565 (-)
G419834 NA non-coding upstream 37828 57900287 ~ 57933416 (-)
G419900 NA non-coding upstream 122765 57985224 ~ 57985552 (-)
G420184 NA non-coding upstream 159827 58022286 ~ 58022803 (-)
G420194 NA non-coding upstream 166512 58028971 ~ 58030854 (-)
G420179 NA non-coding upstream 169662 58032121 ~ 58083723 (-)
G419714 NA other downstream 65700 57699745 ~ 57705936 (-)
G419603 NA other downstream 160069 57611059 ~ 57611567 (-)
G418830 NA other downstream 937041 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1060252 56703896 ~ 56711499 (-)
G420193 NA other upstream 249928 58112387 ~ 58114060 (-)
G420421 NA other upstream 550669 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 1163644 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1270411 59131152 ~ 59138429 (-)
G422347 NA other upstream 2238306 60100765 ~ 60101056 (-)

Expression


Co-expression Network