LOC110524239 (LOC106573579)


Basic Information

Item Value
gene id LOC110524239
gene name LOC106573579
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61058949 ~ 61081864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051826.1
ATCCCTAGTCTACATAAAAATGGTGGATGCCCTCAATGGCACAGCCAATGGTAATACCCACTataggcctctatcattctctatgttCACAACCAACAAACCCTTATGTATGTAGCCATGTATTGCTACATCAATCTAGTTACAAAATATGGCAAATTAATTGTGCCTTGATATTTGGGGCATTGGCAAGCTGTGGAGTCCTTCTTGTTATAGGGGTTTATGTGTTTACCTTTTCTGCTCCGACAGAGGACTGGCAAACGGCCTCGTCTATTTATGACTTCTCTGCAAAGGATATTGATGGCAACGAGGTATCCCTCGAGAAATACAGgggcgaCGTTGTTATCATTGTCAATGTTGCCTCTAAATGAAGTAAAACCCCAGTCAACTACTCTCAGTTTGCGGAGATGCATTCAAAGTACGCTGAGAAAGGTTTACGCATCCTGGCCTTCCCCTCCAACCAGTTCGGGAGACAGGAACCTGGCACTGAATCTCAGATCAAGAATTTTGCCAAGTCCTACAATGCTGATTTCCCAATGTTCAGTAAGATCAATGTGAACGGGCCCAACGCCCACCCCGTGTGGAAGTGGCTGAAGGAGCAGCCCAAGGGGAGAAGCTTCCTGGGAAATGGCATCAAGTGGAATTTCACTAAGTTCCTTATCAACAGAGAGGGCCAGGTTATGAAGAGATATGGACCGATGGGTGATCCCAGCGCGGTGGAGAAGGATCTTCCCAAGTACCTGTAATTCTTTCATCACTGACTGTCTAATGCACTGATGCTGCATCTATCCCTCACTCTCCGATGAGCCAATGCCTGGGAGTGGGTCCATTCCCCAGACCAGTGACAGTCTGTCCGCAAACCAGCCTGGCTGGTAGGACAGACCTGATGAAAACGGCGTGCAACCAATCCCCTGGGAGGACCCGCTATAGGCATAGCCAGCCCCCACCGGAGAAGAATCCTGACCCCCTGAAAATATGATCTTAGTGTCATATTCCATAATAAACATAACGCTTTTGTGCTAA
>XR_002473554.2
AACCAAGCCAGTTGACTAATGTCCATCTCATACCGTGACCTCCCCCCCACTAAACAAAGAATGAAGGCTGGTTTAGTAATCAGGAAACAGTCACTGGTTAGGCAAATGTTTTAATAATAGTCCTGTAGGGCCATTGACGTAAACATTATCCACAACATTTGAATTTTGTTCAAGCCCTTTGCCAAGCTCAGTCTGAGCTGcccacactacagtacacactacagtagatggcTCACTTCAGGAAAAAGTCTGCTCCGACAGAGGACTGGCAAACGGCCTCGTCTATTTATGACTTCTCTGCAAAGGATATTGATGGCAACGAGGTATCCCTCGAGAAATACAGgggcgaCGTTGTTATCATTGTCAATGTTGCCTCTAAATGAAGTAAAACCCCAGTCAACTACTCTCAGTTTGCGGAGATGCATTCAAAGTACGCTGAGAAAGGTTTACGCATCCTGGCCTTCCCCTCCAACCAGTTCGGGAGACAGGAACCTGGCACTGAATCTCAGATCAAGAATTTTGCCAAGTCCTACAATGCTGATTTCCCAATGTTCAGTAAGATCAATGTGAACGGGCCCAACGCCCACCCCGTGTGGAAGTGGCTGAAGGAGCAGCCCAAGGGGAGAAGCTTCCTGGGAAATGGCATCAAGTGGAATTTCACTAAGTTCCTTATCAACAGAGAGGGCCAGGTTATGAAGAGATATGGACCGATGGGTGATCCCAGCGCGGTGGAGAAGGATCTTCCCAAGTACCTGTAATTCTTTCATCACTGACTGTCTAATGCACTGATGCTGCATCTATCCCTCACTCTCCGATGAGCCAATGCCTGGGAGTGGGTCCATTCCCCAGACCAGTGACAGTCTGTCCGCAAACCAGCCTGGCTGGTAGGACAGACCTGATGAAAACGGCGTGCAACCAATCCCCTGGGAGGACCCGCTATAGGCATAGCCAGCCCCCACCGGAGAAGAATCCTGACCCCCTGAAAATATGATCTTAGTGTCATATTCCATAATAAACATAACGCTTTTGTGCTAA
>TU479791
ATTTTACTCACTCTTCTTTTATTCTCTTCCTTCCCAGTCTGCTCCGACAGAGGACTGGCAAACGGCCTCGTCTATTTATGACTTCTCTGCAAAGGATATTGATGGCAACGAGGTATCCCTCGAGAAATACAGgggcgaCGTTGTTATCATTGTCAATGTTGCCTCTAAATGAAGTAAAACCCCAGTCAACTACTCTCAGTTTGCGGAGATGCATTCAAAGTACGCTGAGAAAGGTTTACGCATCCTGGCCTTCCCCTCCAACCAGTTCGGGAGACAGGAACCTGGCACTGAATCTCAGATCAAGAATTTTGCCAAGTCCTACAATGCTGATTTCCCAATGTTCAGTAAGATCAATGTGAACGGGCCCAACGCCCACCCCGTGTGGAAGTGGCTGAAGGAGCAGCCCAAGGGGAGAAGCTTCCTGGGAAATGGCATCAAGTGGAATTTCACTAAGTTCCTTATCAACAGAGAGGGCCAGGTTATGAAGAGATATGGACCGATGGGTGATCCCAGCGCGGTGGAGAAGGATCTTCCCAAGTACCTGTAATTCTTTCATCACTGACTGTCTAATGCACTGATGCTGCATCTATCCCTCACTCTCCGATGAGCCAATGCCTGGGAGTGGGTCCATTCCCCAGACCAGTGACAGTCTGTCCGCAAACCAGCCTGGCTGGTAGGACAGACCTGATGAAAACGGCGTGCAACCAATCCCCTGGGAGGACCCGCTATAGGCATAGCCAGCCCCCACCGGAGAAGAATCCTGACCCCCTGAAAATATG

Function

NR:

description
glutathione peroxidase 4a2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051826.1 False 1020 mRNA 0.47 9 61058949 61075725
XR_002473554.2 False 1035 mRNA 0.48 7 61058949 61081864
TU479791 True 779 TUCP 0.50 6 61058994 61071143

Neighbor

gene id symbol gene type direction distance location
pip5k1ca LOC106613719 coding downstream 5548 60973143 ~ 61053401 (-)
LOC110524237 LOC106613718 coding downstream 87970 60966400 ~ 60970979 (-)
LOC110524236 rb11b coding downstream 92803 60952905 ~ 60966146 (-)
LOC110524231 LOC106613717 coding downstream 107307 60944007 ~ 60951642 (-)
LOC110524230 hnrpm coding downstream 128286 60915017 ~ 60930663 (-)
arhgap45b LOC106613721 coding upstream 774 61082638 ~ 61096386 (-)
tjp3 LOC106613722 coding upstream 22893 61104757 ~ 61131881 (-)
LOC110524243 LOC106613723 coding upstream 57455 61139319 ~ 61242006 (-)
trnaa-agc-3 NA coding upstream 184833 61266697 ~ 61266769 (-)
LOC110522983 LOC106613725 coding upstream 222249 61304113 ~ 61511078 (-)
G423394 NA non-coding downstream 121728 60937000 ~ 60937221 (-)
G423391 NA non-coding downstream 125901 60932799 ~ 60933048 (-)
G423384 NA non-coding downstream 157194 60901516 ~ 60901755 (-)
LOC110524228 LOC106573568 non-coding downstream 174983 60861447 ~ 60884008 (-)
G423495 NA non-coding upstream 164694 61246558 ~ 61246791 (-)
G423497 NA non-coding upstream 166704 61248568 ~ 61248887 (-)
G423509 tm6s1 non-coding upstream 182027 61263891 ~ 61265340 (-)
G423510 NA non-coding upstream 183946 61265810 ~ 61266048 (-)
G423534 hapln4 non-coding upstream 201699 61283563 ~ 61285664 (-)
G422347 NA other downstream 957893 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1920692 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 2022650 59026103 ~ 59036299 (-)
G420421 NA other downstream 2644806 58413128 ~ 58414143 (-)
G420193 NA other downstream 2944889 58112387 ~ 58114060 (-)
G424474 NA other upstream 535006 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 568103 61649967 ~ 61651775 (-)
G424502 NA other upstream 577169 61659033 ~ 61659585 (-)
G424649 NA other upstream 806334 61888198 ~ 61927422 (-)
G424678 NA other upstream 916662 61998526 ~ 62001309 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location