Gene
RNA
| Item | Value |
|---|---|
| gene id | lamp3 |
| gene name | lamp3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 71050056 ~ 71053212 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lamp3 | Involved in several processes, including negative regulation of proteolysis; regulation of autophagy; and response to interferon-alpha. Located in early endosome; perinuclear region of cytoplasm; and plasma membrane. |
| description |
|---|
| lysosome-associated membrane glycoprotein 3-like |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| K06562 | LAMP3, CD208; lysosomal-associated membrane protein 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001281412.3 | True | 1199 | mRNA | 0.41 | 6 | 71050056 | 71053212 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pik3ca | pik3ca | coding | upstream | 4073 | 71034020 ~ 71045983 (+) |
| si:ch211-247n2.1 | LOC106613930 | coding | upstream | 37575 | 70982057 ~ 71012481 (+) |
| si:ch211-51h4.2 | LOC106613927 | coding | upstream | 213230 | 70739208 ~ 70836826 (+) |
| LOC110524461 | naaladl2 | coding | upstream | 311711 | 70455465 ~ 70738345 (+) |
| nlgn1 | nlgn1 | coding | upstream | 701726 | 70065855 ~ 70348330 (+) |
| LOC110524466 | LOC106613934 | coding | downstream | 2357 | 71055569 ~ 71065158 (+) |
| impact | ycu9 | coding | downstream | 53883 | 71107095 ~ 71130228 (+) |
| LOC110524471 | LOC106613937 | coding | downstream | 86558 | 71139770 ~ 71150100 (+) |
| LOC110522992 | LOC106613477 | coding | downstream | 256132 | 71309344 ~ 71324730 (+) |
| si:dkey-183n20.15 | LOC106613949 | coding | downstream | 288290 | 71341502 ~ 71354918 (+) |
| G434702 | NA | non-coding | upstream | 30619 | 71017405 ~ 71019437 (+) |
| G434692 | NA | non-coding | upstream | 49974 | 70999806 ~ 71000082 (+) |
| G434679 | NA | non-coding | upstream | 55716 | 70993634 ~ 70994340 (+) |
| G434677 | NA | non-coding | upstream | 56891 | 70992537 ~ 70993165 (+) |
| G434674 | NA | non-coding | upstream | 63947 | 70985752 ~ 70986109 (+) |
| G434682 | NA | non-coding | downstream | 12288 | 71065500 ~ 71066082 (+) |
| G434685 | NA | non-coding | downstream | 13323 | 71066535 ~ 71067883 (+) |
| G434747 | NA | non-coding | downstream | 97204 | 71150416 ~ 71151014 (+) |
| G434754 | NA | non-coding | downstream | 108737 | 71161949 ~ 71162234 (+) |
| G434759 | NA | non-coding | downstream | 114389 | 71167601 ~ 71206727 (+) |
| G434653 | NA | other | upstream | 90124 | 70959610 ~ 70959932 (+) |
| LOC110524423 | LOC106613476 | other | upstream | 2835952 | 68212224 ~ 68214236 (+) |
| G430796 | LOC106613888 | other | upstream | 2946522 | 68103179 ~ 68103534 (+) |
| LOC110524407 | LOC106613876 | other | upstream | 3585733 | 67458540 ~ 67464323 (+) |
| G429156 | NA | other | upstream | 4001892 | 66981949 ~ 67048164 (+) |
| G434792 | LOC106613943 | other | downstream | 165577 | 71218789 ~ 71223578 (+) |
| G434829 | NA | other | downstream | 245403 | 71298615 ~ 71298900 (+) |
| ralgps2 | LOC106613957 | other | downstream | 622659 | 71552653 ~ 71687963 (+) |
| G436403 | NA | other | downstream | 1450248 | 72503460 ~ 72504435 (+) |
| G436588 | NA | other | downstream | 1942287 | 72995499 ~ 72995735 (+) |
