LOC110514042 (LOC106581256)


Basic Information

Item Value
gene id LOC110514042
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80268607 ~ 80270301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978509.1
aagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAGGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCATCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAACCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacggttttcaaagcaagcttaatacaaca

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978509.1 True 1243 mRNA 0.48 3 80268607 80270301

Neighbor

gene id symbol gene type direction distance location
LOC118964723 NA coding downstream 4047 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding downstream 8778 80256112 ~ 80259829 (-)
LOC118964655 LOC106581256 coding downstream 23959 80240999 ~ 80244648 (-)
LOC118964653 LOC106581256 coding downstream 35246 80223240 ~ 80233361 (-)
LOC118964652 LOC106581256 coding downstream 55123 80211184 ~ 80213484 (-)
LOC118964724 NA coding upstream 12217 80282518 ~ 80308754 (-)
LOC118936654 LOC106581256 coding upstream 17786 80288087 ~ 80302020 (-)
LOC118964656 LOC106581256 coding upstream 18272 80288573 ~ 80290178 (-)
LOC118964725 NA coding upstream 43523 80313824 ~ 80380303 (-)
LOC118964659 LOC106581256 coding upstream 53161 80323462 ~ 80326940 (-)
G445217 NA non-coding downstream 25656 80242586 ~ 80242951 (-)
G445206 NA non-coding downstream 47714 80220638 ~ 80220893 (-)
G445202 NA non-coding downstream 67364 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 95986 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 96574 80171543 ~ 80172033 (-)
G445225 LOC106581256 non-coding upstream 41299 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 41994 80312295 ~ 80312631 (-)
G445230 NA non-coding upstream 65449 80335750 ~ 80335953 (-)
G445244 NA non-coding upstream 117330 80387631 ~ 80388000 (-)
G445220 NA other downstream 7102 80245943 ~ 80261505 (-)
G445197 NA other downstream 91527 80176762 ~ 80177080 (-)
G445115 NA other downstream 280903 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 537071 79730987 ~ 79731536 (-)
G446775 NA other upstream 1672984 81943285 ~ 81943611 (-)
G447220 NA other upstream 2120354 82390655 ~ 82391224 (-)
G447993 NA other upstream 3047212 83315161 ~ 83319715 (-)
G448079 NA other upstream 3240052 83510353 ~ 83520273 (-)
G448411 NA other upstream 3601301 83871602 ~ 83873308 (-)

Expression


Co-expression Network