G368450


Basic Information

Item Value
gene id G368450
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13128660 ~ 13129188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU418782
CCGATGGCAGGATGACTTCAAGGTAAAATATCAGGGGCGGTGCTTGGCAGATAGATGTTTTCAGAACTTAAAGGCAAAGTAATCAATTTAAATATAAATCGGCAGTTGCTGGTTCATAGTGCCGTCAGCCTCCGTTCAGTTTATTTCGGGTAATTTTGGACAGGAAACACTCCACAGGGCGAACCGTGTTTGCAGAGAAGAAGCCTATTTTCCCTCGACCTGTATCTGGTATCTGTGACTGATTTTGGATAGCTCAGATAAAAGTCACGTTATTGACCCAAGTAGAACAGTTCTTTGATTGTTTTTGGTTAGATGTAGATAGCCTTTAGCCGATGCGTCGTAGCCTATGACGATGATGTGTTGTAACCTTACGGTAAGGTTCTATCCTCTCTTTTTATcgaacaattattttttttatagcaAGAGTCCTCcagataaataaatatatgttgtgcAATGT
>TU418779
TTCATAGTGCCGTCAGCCTCCGTTCAGTTTATTTCGGGTAATTTTGGACAGGAAACACTCCACAGGGCGAACCGTGTTTGCAGAGAAGAAGCCTATTTTCCCTCGACCTGTATCTGGTATCTGTGACTGATTTTGGATAGCTCAGATAAAAGTCACGTTATTGACCCAAGTAGAACAGTTCTTTGATTGTTTTTGGTTAGATGTAGATAGCCTTTAGCCGATGCGTCGTAGCCTATGACGATGATGTGTTGTAACCTTACGGTAAGGTTCTATCCTCTCTTTTTATcgaacaattattttttttatagcaAGAGTCCTCcagataaataaatatatgttgtgcAATGT
>TU418783
TTCATAGTGCCGTCAGCCTCCGTTCAGTTTATTTCGGGTAATTTTGGACAGGAAACACTCCACAGGGCGAACCGTGTTTGCAGAGAAGAAGCCTATTTTCCCTCGACCTGTATCTGGTATCTGTGACTGATTTTGGATAGCTCAGATAAAAGTCACGTTATTGACCCAAGTAGAACAGTTCTTTGATTGTTTTTGGTTAGATGTAGATAGCCTTTAGCCGATGCGTCGTAGCCTATGACGATGATGTGTTGTAACCTTACGGTAAGGTTCTATCCTCTCTTTTTATcgaacaattattttttttatagcaAGAGTCCTCcagataaataaatatatgttgtgcAATGTATATCCTCGTCTTGTGATTTCTGAATTTAAAAATCTTCAAACGAGCCCTTTTGTTAGCGTATATGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418782 False 460 lncRNA 0.40 1 13128660 13129119
TU418779 False 348 lncRNA 0.40 1 13128772 13129119
TU418783 True 417 lncRNA 0.39 1 13128772 13129188

Neighbor

gene id symbol gene type direction distance location
ptpa ptpa coding upstream 20947 13089727 ~ 13107713 (+)
LOC110523223 LOC106570883 coding upstream 150321 12802832 ~ 12978339 (+)
psmb7 psmb7 coding upstream 481254 12627072 ~ 12647406 (+)
nr5a1b LOC106570956 coding upstream 536443 12574579 ~ 12592217 (+)
LOC110523216 LOC106570966 coding upstream 568074 12370910 ~ 12560586 (+)
ntmt1 ntmt1 coding downstream 410782 13539970 ~ 13543920 (+)
fkbp15a fkbp15 coding downstream 428566 13557754 ~ 13582939 (+)
rpl12 rpl12 coding downstream 474021 13603209 ~ 13606051 (+)
LOC118964769 NA coding downstream 475141 13604329 ~ 13604454 (+)
LOC118964767 NA coding downstream 475556 13604744 ~ 13604869 (+)
G368445 NA non-coding upstream 13195 13115222 ~ 13115465 (+)
G368441 NA non-coding upstream 18400 13110053 ~ 13110260 (+)
G368432 LOC106570862 non-coding upstream 62912 13060798 ~ 13065748 (+)
G368424 NA non-coding upstream 72762 13055357 ~ 13055898 (+)
G368422 NA non-coding upstream 75727 13052507 ~ 13052933 (+)
G368451 NA non-coding downstream 5168 13134356 ~ 13134770 (+)
G368456 NA non-coding downstream 11625 13140813 ~ 13141299 (+)
G368467 NA non-coding downstream 37633 13166821 ~ 13167155 (+)
G369230 NA non-coding downstream 58735 13187923 ~ 13188126 (+)
G369233 NA non-coding downstream 61031 13190219 ~ 13190443 (+)
G368440 NA other upstream 19526 13108696 ~ 13109134 (+)
G367684 NA other upstream 1248625 11878329 ~ 11880035 (+)
G366973 NA other upstream 1699950 11425642 ~ 11428710 (+)
G366748 NA other upstream 2151508 10976682 ~ 10977152 (+)
G365197 NA other upstream 3279506 9848703 ~ 9849154 (+)
G369763 NA other downstream 636059 13765247 ~ 13769296 (+)
G370360 NA other downstream 1126615 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1191916 14321104 ~ 14325895 (+)
G370414 NA other downstream 1238484 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 1675473 14798616 ~ 14805526 (+)

Expression


Co-expression Network