G385685


Basic Information

Item Value
gene id G385685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28139438 ~ 28139920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU438073
cttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcaggttcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggttttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacatgtgccattaatacaggtaatgagtggaggacagaggagcctcttaaagaggaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccatcatttgcaaataaattcattaaaaatccaacaatgtgattttctggattttttggggggactgtgttcttg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438073 True 483 lncRNA 0.42 1 28139438 28139920

Neighbor

gene id symbol gene type direction distance location
LOC110523534 LOC106566461 coding upstream 26659 28109822 ~ 28112779 (+)
LOC110523531 LOC106566436 coding upstream 71465 28052621 ~ 28067973 (+)
si:ch211-222n4.2 LOC106566406 coding upstream 123386 28008073 ~ 28016052 (+)
LOC110523528 nsma3 coding upstream 145015 27982645 ~ 27994423 (+)
LOC118964522 NA coding upstream 398349 27735878 ~ 27741089 (+)
ftsj1 LOC106566467 coding downstream 88093 28228013 ~ 28235500 (+)
LOC110523538 NA coding downstream 99195 28239115 ~ 28241670 (+)
LOC110518653 LOC106566474 coding downstream 118047 28257967 ~ 28261576 (+)
LOC118964581 NA coding downstream 121857 28261777 ~ 28264335 (+)
ank1b LOC106566514 coding downstream 129917 28269837 ~ 28346918 (+)
G385665 NA non-coding upstream 13125 28125794 ~ 28126313 (+)
G385555 NA non-coding upstream 26001 28112834 ~ 28113437 (+)
G385592 NA non-coding upstream 30055 28109165 ~ 28109383 (+)
G385590 NA non-coding upstream 35833 28103228 ~ 28103605 (+)
G385543 NA non-coding upstream 46065 28089671 ~ 28093373 (+)
G385686 NA non-coding downstream 506 28140426 ~ 28140916 (+)
G385679 LOC106566140 non-coding downstream 5897 28145817 ~ 28161980 (+)
G385675 LOC106566140 non-coding downstream 20924 28160844 ~ 28176961 (+)
G385693 NA non-coding downstream 23614 28163534 ~ 28178814 (+)
G385714 NA non-coding downstream 75560 28215480 ~ 28215737 (+)
G385171 LOC106566130 other upstream 234707 27904467 ~ 27904731 (+)
G385053 NA other upstream 432360 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 456045 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1475825 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1678742 26437517 ~ 26502284 (+)
G385805 NA other downstream 276685 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 786357 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1601880 29741800 ~ 29763439 (+)
G387516 NA other downstream 1757066 29896986 ~ 29898134 (+)
G388019 NA other downstream 2147031 30286951 ~ 30287824 (+)

Expression


Co-expression Network