G385857


Basic Information

Item Value
gene id G385857
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28381657 ~ 28381889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU438270
ctgtatcatagTGCTTGAGttgtcattacagaccctggttcaatcccaggctgtgttacagctggccgtgactgggagacccatgaggcggtgcacaattggcccagcatcgtcctggTTAGGAGAGGATTTGGCAATCCCAGATTtctttgtcccatcgcgctctagcgactcctgttggGGGCCGAGGCATATGCATGCTGAtgcggtcgccaggtgtacagtgtttcctc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106597293

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438270 True 233 lncRNA 0.55 1 28381657 28381889

Neighbor

gene id symbol gene type direction distance location
ank1b LOC106566514 coding upstream 34739 28269837 ~ 28346918 (+)
LOC118964582 NA coding upstream 78549 28297723 ~ 28303108 (+)
LOC118964581 NA coding upstream 117322 28261777 ~ 28264335 (+)
LOC110518653 LOC106566474 coding upstream 120081 28257967 ~ 28261576 (+)
LOC110523538 NA coding upstream 139987 28239115 ~ 28241670 (+)
rnf180 LOC106566588 coding downstream 24835 28406724 ~ 28416408 (+)
rgs7bpb LOC106566593 coding downstream 36333 28418222 ~ 28423947 (+)
ghr1 ghr1 coding downstream 57189 28439078 ~ 28463949 (+)
LOC110523547 ccdc152 coding downstream 82210 28464099 ~ 28467134 (+)
LOC110522905 LOC106563371 coding downstream 91658 28473547 ~ 28475595 (+)
G385856 NA non-coding upstream 677 28380757 ~ 28380980 (+)
G385848 NA non-coding upstream 13763 28366757 ~ 28367894 (+)
G385845 NA non-coding upstream 15154 28365083 ~ 28366503 (+)
G385843 NA non-coding upstream 21620 28359378 ~ 28360037 (+)
G385837 NA non-coding upstream 46805 28334402 ~ 28334852 (+)
G385864 NA non-coding downstream 6838 28388727 ~ 28388933 (+)
G385868 NA non-coding downstream 14648 28396537 ~ 28396746 (+)
G385884 NA non-coding downstream 42414 28424303 ~ 28424517 (+)
G385886 NA non-coding downstream 42631 28424520 ~ 28424894 (+)
G385885 NA non-coding downstream 48792 28430681 ~ 28432375 (+)
G385171 LOC106566130 other upstream 476926 27904467 ~ 27904731 (+)
G385053 NA other upstream 674579 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 698264 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1718044 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1920961 26437517 ~ 26502284 (+)
G385805 NA other downstream 34716 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 544388 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1359911 29741800 ~ 29763439 (+)
G387516 NA other downstream 1515097 29896986 ~ 29898134 (+)
G388019 NA other downstream 1905062 30286951 ~ 30287824 (+)

Expression


Co-expression Network