G386568 (LOC106566731)


Basic Information

Item Value
gene id G386568
gene name LOC106566731
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28994145 ~ 28995123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439028
CAAAAGGGGAACTTCAAAATACACAAAGTCCAACCACGTGTCAATTCAATGTGCAACTTTGTTTTAAAAGCATCAGAACACAATGGTTGCTGAAACACATTGATAGTATGATTTTTGAGTCCTCCAAAACTCATAACAAAGTCAAGCAACCTGGATGGTCAATAATAAAGACAGAATGAGAGGTTCATGCTCCTTATAGCCATTAGTATTGTAAGACATAGTAATTCAGTACGATGCTTGGCATTTTCAGTTGCCTTTACAAACCTATTTCTGAAAAGGTTCATCTGTGAAACTGGAGTCTCCAACTGCAATGCGGCATCATGTACATTTCAGAAACTAATCAGATTTTCCACTTTTCAGTTGAACCTCCTCTTTTCTCCCCATCCTCAGTTGGTGGACTTAGGCAGTCTGTAGATGCCTGCGGACATGATGAGCTGATGGTCTCGCACTTTCCTTTGCAGGAAGGCCTGCAGCTCATTCACGTCCATCTCTGTGACAATTGGTCCCGTGGCAACAAACATCCTGAGCATGGAGTGGATGCGCTCTAGGGTCATGGTCTCCAGGTTGGTCAGCATGGCCTGGATGTAGGCCCAGAAACCTGTAgtttctcctccctctgctctgactgggtggtggtgttggagtcTCCCTCCTCGTCACTGTCAATCAGCATCACCCCTCTCTCAGGTCTCTCCCGGGACGAGCCTGTTTCCAGGACAGAGTAGTGCCCCCCAGCCTCCTCCTTTAGGACCCCCTGCTGCTGCCACAGAGCCAACTTCCTCCTCACCATCTCCTGGGGCACGCCCAGGACCCCACTCAGCTCCTCCAGAGTCCACGAGCCTTCAG

Function

NR:

description
anaphase-promoting complex subunit 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439028 True 846 lncRNA 0.49 2 28994145 28995123

Neighbor

gene id symbol gene type direction distance location
spag8 LOC106566715 coding upstream 62735 28926263 ~ 28931410 (+)
LOC110523559 LOC106566708 coding upstream 114002 28876573 ~ 28880143 (+)
zfand5b zfand5b coding upstream 156956 28829715 ~ 28837189 (+)
smc5 smc5 coding upstream 164717 28805226 ~ 28829428 (+)
LOC110523556 LOC106566689 coding upstream 189434 28796448 ~ 28804711 (+)
ssna1 ssna1 coding downstream 9644 29004767 ~ 29009110 (+)
alad hem2 coding downstream 49980 29045103 ~ 29055942 (+)
LOC110522906 LOC106563306 coding downstream 66152 29061275 ~ 29067123 (+)
coq4 coq4 coding downstream 94402 29089525 ~ 29097342 (+)
LOC110523572 zmynd19 coding downstream 121368 29116491 ~ 29121227 (+)
G386537 NA non-coding upstream 28497 28961817 ~ 28965648 (+)
G386445 NA non-coding upstream 140994 28852880 ~ 28853151 (+)
G386065 NA non-coding upstream 223578 28756510 ~ 28770567 (+)
G386057 NA non-coding upstream 275123 28718802 ~ 28719022 (+)
G386606 NA non-coding downstream 75689 29070812 ~ 29073163 (+)
LOC110523576 LOC106563296 non-coding downstream 179225 29174319 ~ 29187968 (+)
G386814 NA non-coding downstream 201764 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 202008 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 281678 29276801 ~ 29277657 (+)
G385805 NA other upstream 576590 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1089414 27904467 ~ 27904731 (+)
G385053 NA other upstream 1287067 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1310752 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 746677 29741800 ~ 29763439 (+)
G387516 NA other downstream 901863 29896986 ~ 29898134 (+)
G388019 NA other downstream 1291828 30286951 ~ 30287824 (+)
G390184 NA other downstream 2965232 31960355 ~ 31960745 (+)
G390393 NA other downstream 3225058 32220181 ~ 32220533 (+)

Expression


Co-expression Network