XLOC_023267 (acbd5a)


Basic Information

Item Value
gene id XLOC_023267
gene name acbd5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 5915895 ~ 5933082 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046024
ACGTTGAAGGCTTTCGTATGTTGACTGTCAGATTTGATTCGGATCTTCTTGAAGCGGTTAGATTGTCATGATGGAGGGTGACAGCAACCCGCTCTACGAGCAGAGGTTCAACGCTGCTGTCAAAGTCATCCAGAATTTACCATCAAACGgtTCGTTTCAGCCATCCCATGACATGATGCTGAAATTTTATAGCTACTACAAGCAAGCAACACAAGGCCCATGCAACATTCCTCGTCCAGGATTCTGGGACCCCGTGGGCAAAGCCAAATGGGATGCATGGAGTTCTCTTGGGGAAATGCCGAAAGAGGAGGCGATGGCGGCCTACGTGGATGATTTGAAATTGATCCTGGAAAGTATGCCTGTTTCAAGCGAGGTAGAGGAGCTTCTGCAGGTCATCGGACCTTTCTATGAGCTCGTGGATGAGAAGAGGAAGATAACGCAAGTGTCCGATTTAAGCACAGCAGGCTTCGGGAACCTGCTATCATCACCGCCCAAATGTGTCACAAAAAGCATCATCAGGACAATGGAGATGAACGGTAATTTAGAAGGTTATCCTATAAAAACTGCAGAAACGCTGAAGGTGAAATCAATAGATCTGGAGGACagagaagatgatgatgatgaggatgaagaAGGGGAGAGAGATGAAGTAGAGGAGTTTAAAGAGGTGAAAAAAGCATCACAACCGAAGAAGCGGGTTTCAGCAGGGAGACCTAAAGGACCAGTATCTAATGGCAGTATCAGCCAACATAAAGGCCTTAGCAATGGAACGCACGGGTCGAAATCTGATCTGAACAGACAGGAGTCAGAAGAAAACACTGAACACATGAACCATGATGGAGGCATCGTAGAGCTCAATGGACACCTGAATAGTGAGAAAGACAAGGAAGAAGATGTGTCCAGTTCTCACCATGTGGCCAGTGATTCAGACAGCGAGGTGTACTGCGACTCTGTGGACCAGTTTGGTGGAGAAGATGGTTCCGAGATACACATGAACCGCTCTCTGGAAGTGTTGGAGGAGAGCCACAGTACACTGTCCTCCACAGGAGACATCAGATCACAGGATGATGAACTGCTGGGACGAGAGGAAGGCGTGCAGCACGGTGGAGAAGATGGACGGGGCAGCAGAGGAGGAGCTCAGAGACGGGAACTTCCTGTCAAAAGAAGTGACAGCTCTGTGGTCAGGAGGGGAAGAGGGTCCAGGTCGCCTGCCTCTGGCTCTGGGTCAGCGGGACCCCAACAAGGCAGCGGGGGAGACGGGGAGCGCTGGGGGGCGGACGGACCCATGACGGAGAATCTAAACGAACAGATCATCTGCGCTCTGGCCAGGCTGCAGGACGACATGCAGAGCGTCTTACAGAGACTGCACACGCTAGAAGCTCTGACAGCCTCACAGGCCCGGTCCTTAGCGCTGCCTTCAGACTACCTGACAACACCTGCAAACAGAAATAAGAAGAAGCCGTCCTGGTGGCCTTTTGATGTGTCTCTTGGAACTGTGGCCTTTGCTGTGGTTTGGCCGTTTGTGGTGCAGTGGCTCATTCGTGTGTATGTGCAGCGCAGGAGAAGAAGAATCAACTGAAGCAAATCTCCTGCTGGTTTTCTGGAGATGCTACGTGTATAGGAGGAGGGAGGAGGCCGTGTTTTCTGCCTGTCCTGTAACTTTTGCACTAAGATGACGACTCTAAGAATCCGCAAATGAAAAGACAGACTGAATGTACGGCACTGCAGCTTACCACAACTtttcttttgtactttttttaatgcaactaAATTGACAAAACCCTAATTTAGGTCATTTAAAAGTAGAACTGCAGTTAACAGACATCCATTATTAAGGGCATTACATAGTTCACGTCAAATATATACCGTTCAATGTCCTGCGCACATACAGTAGCTGCTAATTGTCGTTAATACTGTAGCAAAGCGTAAGATGCACTGAGTACTTTATAGGTGATTATTACTCCGATTCTTGGCACAATTAGGACCTTGAATCGTAATGCAACGAAATCAGGACCACCACAATTGCTAGTAATGATAATAGTAACGTTTTTTATTAAAAGATACATGTTAATATCTAGACTTGGGGTTCGCTCAAGTGAAATGCGGTGCTGATCAAAGCCATGAATGCTTATGTAACTGACACTTTCCTTTGCAAATGTGTAGAGAGTTAAGTTCTTTGTCTGCTTAATATCAATGATGTCTCACATATCTGACTTAAGAGTGTGTGGACACTGCATATTAAACATCACTGCATTAGATGTAAAATATTGAAGTGCTATTTAATTAAACAAGCACACTTATCAAGCAAAAAAAATCTGCTTAAGTGCGttttcaaagggatagttcacacaaaaatgaaaattctgtcttttttttacttgctccgcattgtttatttcttttgttgaacacagagAAAGATATAATGaagattattagaaaaaaaagccATTTATGGAGTAATTTTAGTTCCTACTATGGCTACAATGAGTTTTTCCTCCCAACATTTGTGTTTTGAACCACTTAAGTGTAAGGAAATTCATTTTTGGGTGGTCTATCCATTTAACGAACACTAGCGTGACTAAAGTGTGCTAATATTTTTGGGATCGACTGTATTTTACACATTGAAACATTTCACAGTAGGTTACTAATGTTAATTTATGGCTGCGGTGAATAATCGAACGCTAGTGTAGGGATTGTTTGCATGTGAAATCCAAAACCTTTTGGTCAATGTTTGCAGGGCTGAGATCGAAACTACGTGGTTGATTTGAAAAGCACTTTGGATGAACGTGAAGAAGGTGAAATCATCTAGGTAATGTTCAAGGCTGAAATCTAACgaatattttacgttttttttttactaaaccgAGAAATGTGAGCGTTTTGTTTAATTGTAGTTTCTGTAAATTAGTcgttaattcctttattaattgtatattagagatgtgcaaatatatataaacatgaaaaGGTCTATTTTAATTGTACTATACTATAATGTAGCATATTATTCATGTCTGTAATACTGCTTCGATTCGTTTATATATCCGGAGAGGTTGTTGATTTAATGCTTTTGTTTGTATTAAACGCACTTAAAAATCACCGTAGCAGATTCTGCGTAAATGTGAGCTATGCATGTTTGGCCATTGTCATAATACACGTCAAACAGTATGTGAGACTTGAGCATCATTAAAAGCTTTTGAAAATTC
>TCONS_00046023
ACGTTGAAGGCTTTCGTATGTTGACTGTCAGATTTGATTCGGATCTTCTTGAAGCGGTTAGATTGTCATGATGGAGGGTGACAGCAACCCGCTCTACGAGCAGAGGTTCAACGCTGCTGTCAAAGTCATCCAGAATTTACCATCAAACGgtTCGTTTCAGCCATCCCATGACATGATGCTGAAATTTTATAGCTACTACAAGCAAGCAACACAAGGCCCATGCAACATTCCTCGTCCAGGATTCTGGGACCCCGTGGGCAAAGCCAAATGGGATGCATGGAGTTCTCTTGGGGAAATGCCGAAAGAGGAGGCGATGGCGGCCTACGTGGATGATTTGAAATTGATCCTGGAAAGTATGCCTGTTTCAAGCGAGGTAGAGGAGCTTCTGCAGGTCATCGGACCTTTCTATGAGCTCGTGGATGAGAAGAGGAAGATAACGCAAGTGTCCGATTTAAGCACAGGCTTCGGGAACCTGCTATCATCACCGCCCAAATGTGTCACAAAAAGCATCATCAGGACAATGGAGATGAACGGTAATTTAGAAGGTTATCCTATAAAAACTGCAGAAACGCTGAAGGTGAAATCAATAGATCTGGAGGACagagaagatgatgatgatgaggatgaagaAGGGGAGAGAGATGAAGTAGAGGAGTTTAAAGAGGTGAAAAAAGCATCACAACCGAAGAAGCGGGTTTCAGCAGGGAGACCTAAAGGACCAGTATCTAATGGCAGTATCAGCCAACATAAAGGCCTTAGCAATGGAACGCACGGGTCGAAATCTGATCTGAACAGACAGGAGTCAGAAGAAAACACTGAACACATGAACCATGATGGAGGCATCGTAGAGCTCAATGGACACCTGAATAGTGAGAAAGACAAGGAAGAAGATGTGTCCAGTTCTCACCATGTGGCCAGTGATTCAGACAGCGAGGTGTACTGCGACTCTGTGGACCAGTTTGGTGGAGAAGATGGTTCCGAGATACACATGAACCGCTCTCTGGAAGTGTTGGAGGAGAGCCACAGTACACTGTCCTCCACAGGAGACATCAGATCACAGGATGATGAACTGCTGGGACGAGAGGAAGGCGTGCAGCACGGTGGAGAAGATGGACGGGGCAGCAGAGGAGGAGCTCAGAGACGGGAACTTCCTGTCAAAAGAAGTGACAGCTCTGTGGTCAGGAGGGGAAGAGGGTCCAGGTCGCCTGCCTCTGGCTCTGGGTCAGCGGGACCCCAACAAGGCAGCGGGGGAGACGGGGAGCGCTGGGGGGCGGACGGACCCATGACGGAGAATCTAAACGAACAGATCATCTGCGCTCTGGCCAGGCTGCAGGACGACATGCAGAGCGTCTTACAGAGACTGCACACGCTAGAAGCTCTGACAGCCTCACAGGCCCGGTCCTTAGCGCTGCCTTCAGACTACCTGACAACACCTGCAAACAGAAATAAGAAGAAGCCGTCCTGGTGGCCTTTTGATGTGTCTCTTGGAACTGTGGCCTTTGCTGTGGTTTGGCCGTTTGTGGTGCAGTGGCTCATTCGTGTGTATGTGCAGCGCAGGAGAAGAAGAATCAACTGAAGCAAATCTCCTGCTGGTTTTCTGGAGATGCTACGTGTATAGGAGGAGGGAGGAGGCCGTGTTTTCTGCCTGTCCTGTAACTTTTGCACTAAGATGACGACTCTAAGAATCCGCAAATGAAAAGACAGACTGAATGTACGGCACTGCAGCTTACCACAACTtttcttttgtactttttttaatgcaactaAATTGACAAAACCCTAATTTAGGTCATTTAAAAGTAGAACTGCAGTTAACAGACATCCATTATTAAGGGCATTACATAGTTCACGTCAAATATATACCGTTCAATGTCCTGCGCACATACAGTAGCTGCTAATTGTCGTTAATACTGTAGCAAAGCGTAAGATGCACTGAGTACTTTATAGGTGATTATTACTCCGATTCTTGGCACAATTAGGACCTTGAATCGTAATGCAACGAAATCAGGACCACCACAATTGCTAGTAATGATAATAGTAACGTTTTTTATTAAAAGATACATGTTAATATCTAGACTTGGGGTTCGCTCAAGTGAAATGCGGTGCTGATCAAAGCCATGAATGCTTATGTAACTGACACTTTCCTTTGCAAATGTGTAGAGAGTTAAGTTCTTTGTCTGCTTAATATCAATGATGTCTCACATATCTGACTTAAGAGTGTGTGGACACTGCATATTAAACATCACTGCATTAGATGTAAAATATTGAAGTGCTATTTAATTAAACAAGCACACTTATCAAGCAAAAAAAATCTGCTTAAGTGCGttttcaaagggatagttcacacaaaaatgaaaattctgtcttttttttacttgctccgcattgtttatttcttttgttgaacacagagAAAGATATAATGaagattattagaaaaaaaagccATTTATGGAGTAATTTTAGTTCCTACTATGGCTACAATGAGTTTTTCCTCCCAACATTTGTGTTTTGAACCACTTAAGTGTAAGGAAATTCATTTTTGGGTGGTCTATCCATTTAACGAACACTAGCGTGACTAAAGTGTGCTAATATTTTTGGGATCGACTGTATTTTACACATTGAAACATTTCACAGTAGGTTACTAATGTTAATTTATGGCTGCGGTGAATAATCGAACGCTAGTGTAGGGATTGTTTGCATGTGAAATCCAAAACCTTTTGGTCAATGTTTGCAGGGCTGAGATCGAAACTACGTGGTTGATTTGAAAAGCACTTTGGATGAACGTGAAGAAGGTGAAATCATCTAGGTAATGTTCAAGGCTGAAATCTAACgaatattttacgttttttttttactaaaccgAGAAATGTGAGCGTTTTGTTTAATTGTAGTTTCTGTAAATTAGTcgttaattcctttattaattgtatattagagatgtgcaaatatatataaacatgaaaaGGTCTATTTTAATTGTACTATACTATAATGTAGCATATTATTCATGTCTGTAATACTGCTTCGATTCGTTTATATATCCGGAGAGGTTGTTGATTTAATGCTTTTGTTTGTATTAAACGCACTTAAAAATCACCGTAGCAGATTCTGCGTAAATGTGAGCTATGCATGTTTGGCCATTGTCATAATACACGTCAAACAGTATGTGAGACTTGAGCATCATTAAAAGCTTTTGAAAATTC
>TCONS_00046025
CGTGCTCGTTTTAACGTCGTTTCGACCATTTATAAAGCACGTCCATCTAAAAATACCACGTTAAATACTGTTCGCTGCACTCTCCGTCATGTCTTGAGTGTCCTTCAGGATTTGTGGACACATAATGGGTGTTTGTAGCTTTGTTTACTTCTTTGGGAACAATAAACTCTCTCGTTAACGAAGGGTTATATAGCATGTAGGTTTACTGCAAATGTACTGTCAACAATACATGACATACATCTGTTAATAGGTAATGTCTTGTTGCTGCTAGATTTGATTCGGATCTTCTTGAAGCGGTTAGATTGTCATGATGGAGGGTGACAGCAACCCGCTCTACGAGCAGAGGTTCAACGCTGCTGTCAAAGTCATCCAGAATTTACCATCAAACGgtTCGTTTCAGCCATCCCATGACATGATGCTGAAATTTTATAGCTACTACAAGCAAGCAACACAAGGCCCATGCAACATTCCTCGTCCAGGATTCTGGGACCCCGTGGGCAAAGCCAAATGGGATGCATGGAGTTCTCTTGGGGAAATGC

Function

symbol description
acbd5a Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. Predicted to act upstream of or within autophagy of peroxisome. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinal dystrophy with leukodystrophy. Orthologous to human ACBD5 (acyl-CoA binding domain containing 5).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0030242 autophagy of peroxisome biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-268 Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. Predicted to act upstream of or within autophagy of peroxisome. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinal dystrophy with leukodystrophy. Orthologous to human ACBD5 (acyl-CoA binding domain containing 5).

Ensembl:

ensembl_id ENSDARG00000034883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046024 False 3209 mRNA 0.43 13 5915895 5933082
TCONS_00046023 False 3206 mRNA 0.43 13 5915895 5933082
TCONS_00046025 True 539 mRNA 0.44 3 5929272 5932982

Neighbor

gene id symbol gene type direction distance location
XLOC_023266 pcolce2b coding downstream 3867 5871589 ~ 5912028 (-)
XLOC_023263 NA coding downstream 78497 5795528 ~ 5837398 (-)
XLOC_023265 NA coding downstream 79181 5815995 ~ 5836714 (-)
XLOC_023264 NA coding downstream 91769 5809520 ~ 5824126 (-)
XLOC_023262 NA coding downstream 110050 5793087 ~ 5805845 (-)
XLOC_023268 pdss1 coding upstream 82217 6015299 ~ 6024466 (-)
XLOC_023269 ftr60 coding upstream 92456 6025538 ~ 6029314 (-)
XLOC_023270 ftr61 coding upstream 101908 6034990 ~ 6038073 (-)
XLOC_023271 apbb1ip coding upstream 106947 6040029 ~ 6078222 (-)
XLOC_023272 NA coding upstream 155190 6088272 ~ 6101120 (-)
XLOC_023665 dre-mir-735 misc upstream 32244879 38177961 ~ 38178027 (-)
XLOC_023259 NA non-coding downstream 308694 5548166 ~ 5607201 (-)
XLOC_023283 BX890551.1 non-coding upstream 838226 6771308 ~ 6772377 (-)
XLOC_023292 CR376854.1 non-coding upstream 2034402 7967484 ~ 7967600 (-)
XLOC_023303 CR318624.1 non-coding upstream 3171531 9104613 ~ 9126025 (-)
XLOC_023304 NA non-coding upstream 3319652 9252734 ~ 9286642 (-)

Expression


Co-expression Network