G388017


Basic Information

Item Value
gene id G388017
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30285585 ~ 30285784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU440678
ccttaagtgctgttagctgggctgtgtgttcctctcctcctccttaagtgcagttagctgggctgtgtgttcctctcctccttcttcagtgctgttagctgtaccaagtgttcctctctctctactctttcagtgctgttagctgtgccatgtgttcctctctcccctcaaGTTCTCTCATCTCAGTCCAGCGTgcagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440678 True 200 lncRNA 0.52 1 30285585 30285784

Neighbor

gene id symbol gene type direction distance location
LOC110523600 LOC106567149 coding upstream 25280 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 67870 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 177036 30105293 ~ 30112442 (+)
LOC110523590 rab14 coding upstream 382662 29859609 ~ 29902923 (+)
tbx5a LOC106566939 coding upstream 522146 29741800 ~ 29763439 (+)
rgs3a LOC106565973 coding downstream 54022 30339806 ~ 30495960 (+)
LOC110523597 LOC106565929 coding downstream 389152 30674936 ~ 30711660 (+)
LOC110522910 LOC106565903 coding downstream 456070 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 680355 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1867124 32152908 ~ 32160417 (+)
G388013 NA non-coding upstream 1493 30283827 ~ 30284092 (+)
G387712 NA non-coding upstream 23911 30261137 ~ 30261674 (+)
G387711 NA non-coding upstream 24467 30260912 ~ 30261118 (+)
G387655 NA non-coding upstream 100616 30113739 ~ 30184969 (+)
G388448 NA non-coding downstream 326455 30612239 ~ 30612506 (+)
G388472 NA non-coding downstream 341862 30627646 ~ 30628015 (+)
G388477 NA non-coding downstream 343568 30629352 ~ 30629649 (+)
G388479 NA non-coding downstream 344578 30630362 ~ 30635355 (+)
G387516 NA other upstream 387451 29896986 ~ 29898134 (+)
spag8 LOC106566715 other upstream 1354654 28926263 ~ 28931410 (+)
G385805 NA other upstream 1868030 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 2380854 27904467 ~ 27904731 (+)
G388019 NA other downstream 1167 30286951 ~ 30287824 (+)
G390184 NA other downstream 1674571 31960355 ~ 31960745 (+)
G390393 NA other downstream 1934397 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2873042 33158826 ~ 33162980 (+)
G391805 NA other downstream 3075173 33360957 ~ 33361341 (+)

Expression


Co-expression Network