G388554


Basic Information

Item Value
gene id G388554
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30728938 ~ 30729182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU441260
ATTGAAGCTTGTGTGCAATTTGAATATAAGcttacaaaaaaatgtaactttAAAACAGCGTTTAATTggtgtgataggagaaaacaactgaggatggatcaacaacattgtagttactccacaatactaacctaaatgacagtgaaaaaaaggaagcctgtacagaaaaaaAGATTCAAAAACATGcacctgtttgcaataaggcactaaagtaaaattgaaaaaataaataaaatatttgtgTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU441260 True 245 lncRNA 0.30 1 30728938 30729182

Neighbor

gene id symbol gene type direction distance location
LOC110523597 LOC106565929 coding upstream 17278 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 232978 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 468633 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 511223 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 620389 30105293 ~ 30112442 (+)
LOC110522910 LOC106565903 coding downstream 12672 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 236957 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1423726 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 1528746 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 1604320 32333502 ~ 32336514 (+)
G388483 NA non-coding upstream 92984 30635717 ~ 30635954 (+)
G388479 NA non-coding upstream 93583 30630362 ~ 30635355 (+)
G388477 NA non-coding upstream 99289 30629352 ~ 30629649 (+)
G388472 NA non-coding upstream 100923 30627646 ~ 30628015 (+)
G388448 NA non-coding upstream 116432 30612239 ~ 30612506 (+)
G388615 NA non-coding downstream 96527 30825709 ~ 30825985 (+)
G388616 NA non-coding downstream 97118 30826300 ~ 30826523 (+)
G388617 NA non-coding downstream 100060 30829242 ~ 30830252 (+)
G388623 NA non-coding downstream 111458 30840640 ~ 30840877 (+)
G388019 NA other upstream 441114 30286951 ~ 30287824 (+)
G387516 NA other upstream 830804 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 982744 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 1798007 28926263 ~ 28931410 (+)
G385805 NA other upstream 2311383 28416605 ~ 28417555 (+)
G390184 NA other downstream 1231173 31960355 ~ 31960745 (+)
G390393 NA other downstream 1490999 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2429644 33158826 ~ 33162980 (+)
G391805 NA other downstream 2631775 33360957 ~ 33361341 (+)
G392776 NA other downstream 3418292 34147474 ~ 34150795 (+)

Expression


Co-expression Network