XLOC_023276 (zgc:174877)


Basic Information

Item Value
gene id XLOC_023276
gene name zgc:174877
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6286599 ~ 6345965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046037
GACCGTGAAGGAGGAAATGGTGAcatttcacacattcacacacggaTTCGTGTCAAGATGCCTTTTTCAAACAACGAGAAATCAGCTCGTCACAGAGCAAAGGTGAATGCTGATCCTGTTGCGAGAGCCAGATACCTTGCAAAAAGAAGAGAGAGCTATCAGCGAAGGAAGAGGGAAGGAAAGACAAAACTTTCTTCAGTCACCGAACTCTCTAAAGCGAAACAGGATGAGTTGAGGCAGAAATGGAGACATTACAAGAGAAGTCACAGGATGAGGATTCACAATCTATCACTGCATTCCTGCTCTGAGCTGGATGTGAACCCTGAATGGCTGCAGAATTTTGCTCCATATTCCCCCGGCAGTGAGGCTGAGGAGAGCAAGGAGGTTCCTGTGAGCAGCTGCAGTGTGGTGAAACAGGAACCAGAGACTGTGGAAATCCAGTGGGAAAATGTGAACTCACCTCCACCAGCAGTGTCTTCTGATTCAGAGCCGAACAACGCTCAAAGCAGCGCCATTTCAATTGGCTCCAAGCGCTATGACGAAAGGAAGAACAGACGTCAGCAATGAACATGTTCAACCCCCTTCTAATTGATATTGGCTGTAGGAGCAGTCAATCATCATTATCTTCAGTGATGTTGTGGCTTCGGCAGCCAATCTGAGTGGTTGCCAGGGTTTTAAAAAGACGACGAGTGG
>TCONS_00046039
CAGCAACAGTTGGGTGAAACAGGAGCCGGAGGTTAATGCAATCCAGTGGGAAGACAGGAACTTTGAGCCTGCCGTTCAAGTTGAGAAGGACAACAATGTGAACAGTGCTGTCTCCAGTACAACGCCTTCGATGGAGGGTCTACCCAGCAGTGTTATGCTAACCATCACTAAACTTCAGTGCTTACTGGAGAGCAAACAGGAAAGGATCGAAGCTCTGGAAAGACAAGTGCAAGACTGAACCCTGAATGGCTGCAGAATTTTGCTCCATATTCCCCCGGCAGTGAGGCTGAGGAGAGCAAGGAGGTTCCTGTGAGCAGCTGCAGTGTGGTGAAACAGGAACCAGAGACTGTGGAAATCCAGTGGGAAAATGTGAACTCACCTCCACCAGCAGTGTCTTCTGATTCAGAGCCGAACAACGCTCAAAGCAGCGCCATTTCAATAACACCTCCCATAATGGAAAAAGTACACTGCAGTGTTAAGCTGACCATGACCAAGCTCCACTGTCTGCTGGAAAGCAAACAGGAAAAGATTGAAGCTCTGGAGAAACAGTTCGTGACTGACAAAGCAACGATTGCCGGTTGCCACATAAGTCATTTTTGGATGGGATGGCTTGTGAGAGTGTGTCCACCTGCTGTCCTTTCAGAACAGACAGCTGTGGTCCTCTTGCTGACTGCTGAGGGTACCGGAGGATCTCGCTGAAGGGGACGCCATGCTTTGAGCCTAATGGAGCCTGAAGCATCATAACCAACGTGACTGGAATGAAGGCCGAGTGCAGCAGCTGCAGCTATGAGTCTCTGAAAGTGACTGCTTTCACTGGGGTGTGCGACTGGTGTCTTAAAATAACCAACACACCATTTTAAGTGGGTCAGAGCTGGACGAGGTTGCCAAAGGCCTGCACATGCACCAGTGGACATACTGAGCTACATCCTGGTCATTTTACCCCGCAAGCGAAAGTGAAGGATGATACTGTGTCTGTTTAATGCAGGTCAGCAGAGCACTGACACTTACATTATGACAGTAT
>TCONS_00046038
CAGCAACAGTTGGGTGAAACAGGAGCCGGAGGTTAATGCAATCCAGTGGGAAGACAGGAACTTTGAGCCTGCCGTTCAAGTTGAGAAGGACAACAATGTGAACAGTGCTGTCTCCAGTACAACGCCTTCGATGGAGGGTCTACCCAGCAGTGTTATGCTAACCATCACTAAACTTCAGTGCTTACTGGAGAGCAAACAGGAAAGGATCGAAGCTCTGGAAAGACAAGTGCAAGACTTTCAAACAACGAGAAATCAGCTCGTCACAGAGCAAAGGTGAATGCTGATCCTGTTGCGAGAGCCAGATACCTTGCAAAAAGAAGAGAGAGCTCTGAGCTGGATGTGAACCCTGAATGGCTGCAGAATTTTGCTCCATATTCCCCCGGCAGTGAGGCTGAGGAGAGCAAGGAGGTTCCTGTGAGCAGCTGCAGTGTGGTGAAACAGGAACCAGAGACTGTGGAAATCCAGTGGGAAAATGTGAACTCACCTCCACCAGCAGTGTCTTCTGATTCAGAGCCGAACAACGCTCAAAGCAGCGCCATTTCAATAACACCTCCCATAATGGAAAAAGTACACTGCAGTGTTAAGCTGACCATGACCAAGCTCCACTGTCTGCTGGAAAGCAAACAGGAAAAGATTGAAGCTCTGGAGAAACAGTTCGTGACTGACAAAGCAACGATTGCCGGTTGCCACATAAGTCATTTTTGGATGGGATGGCTTGTGAGAGTGTGTCCACCTGCTGTCCTTTCAGAACAGACAGCTGTGGTCCTCTTGCTGACTGCTGAGGGTACCGGAGGATCTCGCTGAAGGGGACGCCATGCTTTGAGCCTAATGGAGCCTGAAGCATCATAACCAACGTGACTGGAATGAAGGCCGAGTGCAGCAGCTGCAGCTATGAGTCTCTGAAAGTGACTGCTTTCACTGGGGTGTGCGACTGGTGTCTTAAAATAACCAACACACCATTTTAAGTGGGTCAGAGCTGGACGAGGTTGCCAAAGGCCTGCACATGCACCAGTGGACATACTGAGCTACATCCTGGTCATTTTACCCCGCAAGCGAAAGTGAAGGATGATACTGTGTCTGTTTAATGCAGGTCAGCAGAGCACTGACACTTACATTATGACAGTAT
>TCONS_00046040
AAAGAAAGAGAACATTAACGTTACTAGCAATATGCACAGGTTAGCTAGTCGCTTTATAATAAGTGTTCATTTCAGATTTTACAGACATGGAAATAATCATTTGGCATCCGTGAAATAAGGAGAAAGAGCACCTCCTCCGGTCATTATTCCCATGAACAGCATGTTTGATTTAAAGTGTGAGAGCTCTTCAGGTGAAGAGGAGGAAGAGACGGAGGCAGGAGACCCCGCTTTAACAGCACAGATATCCAGATGTGCAAACGTATCATCAGCGGATTTGGACTTATTGGAACACACCCGGAACGAGTCTAGTACTGTAAAGCAAACCATATGGGCTGTTAACTGTTTTAAAGCCTGGCTGCGGGAAAAGCAGCTGACCATAGACTTTAAAACGGCCGATAAATCGGAGGTAAACACAATCCTCCGCGAGTTTTATGGATCTATTCGGACCAGCAAAGGAGAGCTGTACGGGATCAGCAGCTACGTCGGTCTCCGGGCTGGACTCAACCGGTACGTTAACGACCCTCCGGTCAACCGTGCGTGGAATCTGATGCAGGACGCTGAGTTCAGGTCTGCTAACAATGTTTTCAAAGGCGTGGTCAAGCAGATCCGTCGCTCCGGTAGGGATATAACAACACACTACCCACCAATTACCCCTGAAGACCAACACATCCTCAAACATTCAACTGCACTGGACCCTGGGAACCCAAAGGGCTTGTTGTATAAGGTGTGGTATGACATCCAGTTGCATTTTGGGCTCAGGGGTAAGGAGGGCAACCGACACCTGCAGCCAGACACATTTGCTCTGAACCTGGACCAAAACGGATTTAAATACTTCACCATGGCACTACACGAGGAACCGAAGAACATGCCGGAGAAGGATAAGAAGAAGCGGAAGGCTATGTTTGAAGAGCCGGGGAATCCGCTGTGTCCTGTTGCGTCTCTGGAGAAATACCTGAGGAAAATCCCAGCCGACGCTAAAGCTCTCTATCTGCAGCCCAAAAGGAGCTATTTCCTCAGTGATGAGATCTGGTATACTGGACTCCCACTGGGAGTCAATCATTTGTCCCAAATGCTGCCCAAAATATGCAAAGAGGCAGGCACGAGAACGATATACACTAACCACAGTCTGAGGATAACAGCGATTCAGAGACTGAACGAACCGAGGGAGatcatggcagtttgtttacAAAGtgttccaGTTGAGATTACCACCCAGTGGCCTTCACTGCAGGAACCCACCCCATACTCTCCTGCCAGTGAGATCGACTCCAGTTCTGCCAAACAGGAGAGTCCTGTGAACAGTAACAGCAACAGTTGGGTGAAACAGGAGCCGGAGGTTAATGCAATCCAGTGGGAAGACAGGAACTTTGAGCCTGCCGTTCAAGTTGAGAAGGACAACAATGTGAACAGTGCTGTCTCCAAGACGCCTTCGATGGAGGGTCTACCCAGCAGTGTTATGCTAACCATCACTAAACTTCAGTGCTTACTGGAGAGCAAACAGGAAAGGATCGAAGCTCTGGAAAGACAAGTGCAAGACCTAATGGAGGATCGCAAGTTCCTCCGCGCACAAATAGAGAACCTCACTGGTGCTCGTCTTATTTCAGTGCCTGAAGCAAGTACATCATTGATCTCTGAGTCCAGGTCACGTAAAAGACGGCGAAAGAGCTCATCCAGCTCATACATCAACGATGAGTGCTTCACCGATGAATCCAGCAGCACATCGTCATCTGAAGAGTCTAGCAGCATGAGGAAAAAGAGACGCCataagaagaagaggaagagagGATACGTTCCCCAGTGTGACTAGGTCTTGATTCGCCTTCatcaagaaaaagaagaa
>TCONS_00046041
TGAATagtatattgtaaataatgataTAGCCTACCATTTACATGATGAAGAATGTACATTAAGCACGAGCGTTTTTGATCATATTCGAGAAAAAAATTCTTACTGCAAGGCCTCAGGACTTCAGTAGCATTTGATGTGCTTAACGTTTATTTAAAATCACATGTGTATATTAAATTGTACATAGACATGTTTACCACCTGTATTCTCTCGGCTGAAAGCATAGCCTGGGACAAGATTACTTATTATCACAGTAAACGGCAGGTGGCGGTATATTTCTGCGGCTCTCCATCCTCCACCATCTCCAAGAAGAAGAACAACAAAGAAAGAGAACATTAACGTTACTAGCAATATGCACAGGTTAGCTAGTCGCTTTATAATAAGTGTTCATTTCAGATTTTACAGACATGGAAATAATCATTTGGCATCCGTGAAATAAGGAGAAAGAGCACCTCCTCCGGTCATTATTCCCATGAACAGCATGTTTGATTTAAAGTGTGAGAGCTCTTCAGGTGAAGAGGAGGAAGAGACGGAGGCAGGAGACCCCGCTTTAACAGCACAGATATCCAGATGTGCAAACGTATCATCAGCGGATTTGGACTTATTGGAACACACCCGGAACGAGTCTAGTACTGTAAAGCAAACCATATGGGCTGTTAACTGTTTTAAAGCCTGGCTGCGGGAAAAGCAGCTGACCATAGACTTTAAAACGGCCGATAAATCGGAGGTAAACACAATCCTCCGCGAGTTTTATGGATCTATTCGGACCAGCAAAGGAGAGCTGTACGGGATCAGCAGCTACGTCGGTCTCCGGGCTGGACTCAACCGGTACGTTAACGACCCTCCGGTCAACCGTGCGTGGAATCTGATGCAGGACGCTGAGTTCAGGTCTGCTAACAATGTTTTCAAAGGCGTGGTCAAGCAGATCCGTCGCTCCGGTAGGGATATAACAACACACTACCCACCAATTACCCCTGAAGACCAACACATCCTCAAACATTCAACTGCACTGGACCCTGGGAACCCAAAGGGCTTGTTGTATAAGGTGTGGTATGACATCCAGTTGCATTTTGGGCTCAGGGGTAAGGAGGGCAACCGACACCTGCAGCCAGACACATTTGCTCTGAACCTGGACCAAAACGGATTTAAATACTTCACCATGGCACTACACGAGGAACCGAAGAACATGCCGGAGAAGGATAAGAAGAAGCGGAAGGCTATGTTTGAAGAGCCGGGGAATCCGCTGTGTCCTGTTGCGTCTCTGGAGAAATACCTGAGGAAAATCCCAGCCGACGCTAAAGCTCTCTATCTGCAGCCCAAAAGGAGCTATTTCCTCAGTGATGAGATCTGGTATACTGGACTCCCACTGGGAGTCAATCATTTGTCCCAAATGCTGCCCAAAATATGCAAAGAGGCAGGCACGAGAACGATATACACTAACCACAGTCTGAGGATAACAGCGATTCAGAGACTGAACGAACCGAGGGAGatcatggcagtttgtttacAAAGtgttccaGTTGAGATTACCACCCAGTGGCCTTCACTGCAGGAACCCACCCCATACTCTCCTGCCAGTGAGATCGACTCCAGTTCTGCCAAACAGGAGAGTCCTGTGAACAGTAACAGCAACAGTTGGGTGAAACAGGAGCCGGAGGTTAATGCAATCCAGTGGGAAGACAGGAACTTTGAGCCTGCCGTTCAAGTTGAGAAGGACAACAATGTGAACAGTGCTGTCTCCACAGAGACGCCTTCGATGGAGGGTCTACCCAGCAGTGTTATGCTAACCATCACTAAACTTCAGTGCTTACTGGAGAGCAAACAGGAAAGGATCGAAGCTCTGGAAAGACAAGTGCAAGACCTAATGGAGGATCGCAAGTTCCTCCGCGCACAAATAGAGAACCTCACTGGTGCTCGTCTTATTTCAGTGCCTGAAGCAAGTACATCATTGATCTCTGAGTCCAGGTCACGTAAAAGACGGCGAAAGAGCTCATCCAGCTCATACATCAACGATGAGTGCTTCACCGATGAATCCAGCAGCACATCGTCATCTGAAGAGTCTAGCAGCATGAGGAAAAAGAGACGCCataagaagaagaggaagagagGATACGTTCCCCAGTGTGACTAG

Function

symbol description
zgc:174877 Predicted to be active in nucleoplasm.

GO:

id name namespace
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-66 Predicted to be active in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000079278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046037 False 693 processed_transcript 0.47 6 6286599 6333673
TCONS_00046039 False 1021 lncRNA 0.50 6 6291593 6342897
TCONS_00046038 False 1126 processed_transcript 0.49 7 6291593 6342897
TCONS_00046040 False 1840 mRNA 0.48 5 6338033 6345647
TCONS_00046041 True 2128 mRNA 0.47 5 6338066 6345965

Neighbor

gene id symbol gene type direction distance location
XLOC_023275 myo3a coding downstream 26266 6161037 ~ 6260333 (-)
XLOC_023274 gad2 coding downstream 127666 6133147 ~ 6158933 (-)
XLOC_023272 NA coding downstream 185479 6088272 ~ 6101120 (-)
XLOC_023273 si:ch211-37e10.1 coding downstream 190042 6094164 ~ 6096557 (-)
XLOC_023271 apbb1ip coding downstream 208377 6040029 ~ 6078222 (-)
XLOC_023277 anxa13 coding upstream 14458 6360423 ~ 6375774 (-)
XLOC_023278 gpr158a coding upstream 49420 6395385 ~ 6501211 (-)
XLOC_023279 arhgap21a coding upstream 167878 6513843 ~ 6647275 (-)
XLOC_023280 unm_sa821 coding upstream 311347 6657312 ~ 6671549 (-)
XLOC_023281 enkur coding upstream 327235 6673200 ~ 6678640 (-)
XLOC_023665 dre-mir-735 misc upstream 31831996 38177961 ~ 38178027 (-)
XLOC_023263 NA non-coding downstream 449201 5795528 ~ 5837398 (-)
XLOC_023265 NA non-coding downstream 449885 5815995 ~ 5836714 (-)
XLOC_023264 NA non-coding downstream 462473 5809520 ~ 5824126 (-)
XLOC_023262 NA non-coding downstream 480754 5793087 ~ 5805845 (-)
XLOC_023283 BX890551.1 non-coding upstream 425343 6771308 ~ 6772377 (-)
XLOC_023292 CR376854.1 non-coding upstream 1621519 7967484 ~ 7967600 (-)
XLOC_023303 CR318624.1 non-coding upstream 2758648 9104613 ~ 9126025 (-)
XLOC_023304 NA non-coding upstream 2906769 9252734 ~ 9286642 (-)
XLOC_023305 NA non-coding upstream 2929130 9275095 ~ 9281017 (-)

Expression


Co-expression Network