G389447


Basic Information

Item Value
gene id G389447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 31443170 ~ 31443501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU442190
CCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTGGACCCTGTGTAAAccagtattctcttagggagttcttctttactattccaatgagaaggactgtcaccaggaagctctaaggcatagcgattggtctcctcaactatgtctcccaccagctcctctgtcagaaacaacttgaagcactctgcctcagttggaaatggcaaggggcgttgcactccagactgggactcgtcaaagcaaacagcagggccag

Function

NR:

description
uncharacterized protein LOC110505511 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442190 True 255 lncRNA 0.51 2 31443170 31443501

Neighbor

gene id symbol gene type direction distance location
LOC110522913 LOC106565915 coding upstream 470827 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 587572 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 731510 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 947210 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 1182865 30256373 ~ 30260305 (+)
LOC110523608 NA coding downstream 709407 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 814427 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 890001 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 897375 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 960997 32404498 ~ 32485105 (+)
G389395 NA non-coding upstream 62565 31380271 ~ 31380605 (+)
G388720 NA non-coding upstream 397529 30999771 ~ 31045641 (+)
G388692 NA non-coding upstream 473869 30968998 ~ 30969301 (+)
G389728 NA non-coding downstream 187687 31631188 ~ 31631449 (+)
G389732 NA non-coding downstream 189770 31633271 ~ 31633553 (+)
G389754 NA non-coding downstream 205637 31649138 ~ 31649355 (+)
G389757 NA non-coding downstream 206592 31650093 ~ 31650316 (+)
G389901 NA non-coding downstream 300671 31744172 ~ 31744467 (+)
G388019 NA other upstream 1155346 30286951 ~ 30287824 (+)
G387516 NA other upstream 1545036 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 1696976 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 2512239 28926263 ~ 28931410 (+)
G385805 NA other upstream 3025615 28416605 ~ 28417555 (+)
G390184 NA other downstream 516854 31960355 ~ 31960745 (+)
G390393 NA other downstream 776680 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 1715325 33158826 ~ 33162980 (+)
G391805 NA other downstream 1917456 33360957 ~ 33361341 (+)
G392776 NA other downstream 2703973 34147474 ~ 34150795 (+)

Expression


Co-expression Network