XLOC_023284 (actr3b)


Basic Information

Item Value
gene id XLOC_023284
gene name actr3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7294929 ~ 7321934 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046056
TACGTTAGTGCTGGTGATGGCAGCAGCTCGGCCCCCTCCATGCGTGATTGACTGCGGGACAGGGTACACCAAGATTGGTTATGCTGGAAACACAGAGCCCCAGTTCATCATGCCAACTTGTATTGCGGTCAGAGAGTCAGCCAGTGTTGGAGATCAGGCACAGAGACGTCTTGTGAAAGGGGTGGATGACCTTGATTTCTTTATTGGAGACGAAGCCATCGATAAGCCCAACTATGCAACCAAGTGGCCCATCAGACATGGTATTATTGAGGACTGGGACTTCATGGAAAAGTTCATGGAGCAGGTCATATTTAAATATCTCCGAGCAGAGCCCGAGGACCACAACTTCCTGATGACAGAACCTCCTCTAAATACCCCAGAGAACCGGGAATACTTAGCTGAGATCATGTTTGAAACGTTCAACGTTCCAGGGTTGTACATCGCTGTTCAGGCTGTTTTGGCATTGGCAGCATCTTGGACTTCAAGACAGGTTGGAGAACGAACGCTAACAGGAATTGTGATTGATAGTGGTGATGGAGTTACTCATGCTATACCAGTgGCAGAAGGGTATGTGATTGGCAGCTGCATAAAGCACATCCCAATAGCAGGCAGAGACATCACCTACTTCATTCAACAGCTGCTGAGAGAGCGAGAGATCGGCATTCCTCCAGAACAGTCGCTGGAGACTGCAAAAGCTGTTAAAGAAAGATATTGCTACATCTGTCCAGACATCGTGAAGGAATTCACCAAATATGACATGGACCCTggaaaatggattaaaaaatacaaGGGGATCAATGCTATCAGCAAAAATGAATTTCAAATAGATGTCGGATACGAGCGTTTTCTGGGACCAGAGATATTTTTTCACCCCGAGTTTGCCAACCCAGACTTCATGCAGCCCATCTCAGATGTTGTGGATGAAGTGATTCAGAACTGCCCTATAGATGTCAGAAGACCGCTATACAAGAACATAGTCCTGTCGGGGGGCTCCACAATGTTTCGGGACTTTGGCCGCAGACTGCAGAGGGACCTGAAGCGTGTTGTGGATGCCAGACTCAGACTGAGTGAGGAGCTCAGCGGCGGCAGAATAAAGCCCAAGCCCATGGAAGTGCAGGTTATATCCCATCACATGCAGCGATACGCAGTGTGGTTTGGCGGATCTATGTTGGCTTCTACGCCTGAATTCTTCCAAGTCTGCCATACTAAGAAGGACTACGAGGAATACGGACCTAGAATCTGTCGCCACAACCCTGTCTTTGGCATCATGTCCTA
>TCONS_00046057
AGTGCTGGTGATGGCAGCAGCTCGGCCCCCTCCATGCGTGATTGACTGCGGGACAGGGTACACCAAGATTGGTTATGCTGGAAACACAGAGCCCCAGTTCATCATGCCAACTTGTATTGCGGTCAGAGAGTCAGCCAGTGTTGGAGATCAGGCACAGAGACGTCTTGTGAAAGGGGTGGATGACCTTGATTTCTTTATTGGAGACGAAGCCATCGATAAGCCCAACTATGCAACCAAGTGGCCCATCAGACATGGTATTATTGAGGACTGGGACTTCATGGAAAAGTTCATGGAGCAGGTCATATTTAAATATCTCCGAGCAGAGCCCGAGGACCACAACTTCCTGATGACAGAACCTCCTCTAAATACCCCAGAGAACCGGGAATACTTAGCTGAGATCATGTTTGAAACGTTCAACGTTCCAGGGTTGTACATCGCTGTTCAGGCTGTTTTGGCATTGGCAGCATCTTGGACTTCAAGACAGGTTGGAGAACGAACGCTAACAGGAATTGTGATTGATAGTGGTGATGGAGTTACTCATGCTATACCAGTgGCAGAAGGGTATGTGATTGGCAGCTGCATAAAGCACATCCCAATAGCAGGCAGAGACATCACCTACTTCATTCAACAGCTGCTGAGAGAGCGAGAGATCGGCATTCCTCCAGAACAGTCGCTGGAGACTGCAAAAGCTGTTAAAGAAAGATATTGCTACATCTGTCCAGACATCGTGAAGGAATTCACCAAATATGACATGGACCCTggaaaatggattaaaaaatacaaGGGGATCAATGCTATCAGCAAAAATGAATTTCAAATAGATGTCGGATACGAGCGTTTTCTGGGACCAGAGATATTTTTTCACCCCGAGTTTGCCAACCCAGACTTCATGCAGCCCATCTCAGATGTTGTGGATGAAGTGATTCAGAACTGCCCTATAGATGTCAGAAGACCGCTATACAAGGTAGAATACCAATATTATGCAATAGAGCGCTACAGTGATCAGGCAAGTTGAAAGTTTGCATCAGTCTAGTTCTCTTGATAAAAACTCTGAAACTTTGGCTTTTGTATTTTGGCTGAAGTTCAGCTCTCAagcttttgtggtcaacaaagtTTATAACTCAAATCTGTAGGCacatcctgtatttttttttttttttcagttaaattgtcagatcaGGAAGCAAGCAGGATTTATATCTAAACTTTTTTTAGTCACCTCAACTTATTTTAATCAAACTGagtaaaatatacagttaaactTAAAACATGTAGTTGAAACCTTTAATAAGTAAAAGCAACATAAAAGCC

Function

symbol description
actr3b Predicted to contribute to actin filament binding activity. Predicted to be active in actin cortical patch. Orthologous to human ACTR3B (actin related protein 3B).

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-10 Predicted to contribute to actin filament binding activity. Predicted to be active in actin cortical patch. Orthologous to human ACTR3B (actin related protein 3B).

Ensembl:

ensembl_id ENSDARG00000008790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046056 False 1275 mRNA 0.48 12 7294929 7321934
TCONS_00046057 True 1311 mRNA 0.43 9 7306021 7321928

Neighbor

gene id symbol gene type direction distance location
XLOC_023282 dpp6a coding downstream 396627 6687892 ~ 6898302 (-)
XLOC_023283 BX890551.1 coding downstream 522552 6771308 ~ 6772377 (-)
XLOC_023281 enkur coding downstream 616289 6673200 ~ 6678640 (-)
XLOC_023280 unm_sa821 coding downstream 623380 6657312 ~ 6671549 (-)
XLOC_023279 arhgap21a coding downstream 647654 6513843 ~ 6647275 (-)
XLOC_023285 galnt11 coding upstream 232648 7554582 ~ 7587401 (-)
XLOC_023286 atp6v0a1b coding upstream 274075 7596009 ~ 7632187 (-)
XLOC_023287 syt5b coding upstream 364530 7686464 ~ 7699356 (-)
XLOC_023288 ptprh coding upstream 392080 7714014 ~ 7728409 (-)
XLOC_023289 rpgrip1 coding upstream 426817 7748751 ~ 7777389 (-)
XLOC_023665 dre-mir-735 misc upstream 30856027 38177961 ~ 38178027 (-)
XLOC_023272 NA non-coding downstream 1193809 6088272 ~ 6101120 (-)
XLOC_023263 NA non-coding downstream 1457531 5795528 ~ 5837398 (-)
XLOC_023265 NA non-coding downstream 1458215 5815995 ~ 5836714 (-)
XLOC_023264 NA non-coding downstream 1470803 5809520 ~ 5824126 (-)
XLOC_023292 CR376854.1 non-coding upstream 645550 7967484 ~ 7967600 (-)
XLOC_023303 CR318624.1 non-coding upstream 1782679 9104613 ~ 9126025 (-)
XLOC_023304 NA non-coding upstream 1930800 9252734 ~ 9286642 (-)
XLOC_023305 NA non-coding upstream 1953161 9275095 ~ 9281017 (-)
XLOC_023307 NA non-coding upstream 2185740 9507674 ~ 9612356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_01214033_01229228 ACTR3B coding CI01000327 null 1213931 ~ 1229228 (-)