XLOC_002330


Basic Information

Item Value
gene id XLOC_002330
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38025045 ~ 38034835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005931
TGGGAACGAGCAGCCCGAGAGATCCGAGTCTAATCAATTCCTATTAGTTTAGCATTTCTCATGCAGCCAGGGGCCTCACGGGACACATAAACGGCAGATCAAATTTGAGCAATATGTTTGATGAAATGATGAGACGGTACAGTATGTGTGGTCTGTGTGAAGGGGCTGCTGGCCATTCATCACCAATATCAATTTTACTGTTTAAATGCCTCAACCACGCAGATTCAGTTTTATCAAACCATCCTTTAACATTAGCGTCACATTATCAACGACAGAGATGAGAAACATGACTTGCTTTACGGGTTTAGCAGATTAGACATTTATTCTCAACACTATGCATTAATTACTAAATACTGACGCGCTGCTGCCCCCTTCTGGACAACAGGAGCACACGCAGCAACAAATGACAACAGCCCATGATGGAGTTGATCCCCCAGCTGTCCTGTGGACGGGACTCTCCACAGTCGGGCGGCTCCATCTGTCGGCGTGCTCGTGTTCTGGCTGCTTCTTCTGTCATGTCTGACACGCAGCTGCACGGGTGTTTGTGCTGGATCTCCAGCAGAAGAGCAGCACCGCTGAGCTGCTGAGAGACAGCAGACACCATCATCCAGTCCACACCATCATCACTTCATCAAGGAGAAACATCCCACTTTTACATTTGACAAAATCACAGGGCAGACCTGGAAAATTCAACCAAATAACGTCATCACAAATAAGGCCTGATCAGCTGATGAGTGGTGATGATTCAGACTCTCACTCAGGTTAAAGAGTTCACCACATCATGAACCAGAAAACCATAGTCAACATCTCTCCTCCTGCCTCGCTTTAGTGCCAACTCCAGGATTAAAGACTCCGAGCAGGCCTGCAGACTCAGGAGAGTCCATTGAGTTCACATCAACAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005931 True 903 lncRNA 0.47 4 38025045 38034835

Neighbor

gene id symbol gene type direction distance location
XLOC_002329 wscd1b coding upstream 16675 37981471 ~ 38008370 (+)
XLOC_002328 bhlha9 coding upstream 96920 37927100 ~ 37928125 (+)
XLOC_002327 NA coding upstream 135484 37865419 ~ 37889561 (+)
XLOC_002326 msi2a coding upstream 241021 37500234 ~ 37784024 (+)
XLOC_002325 NA coding upstream 546489 37478245 ~ 37478556 (+)
XLOC_002331 samsn1b coding downstream 382677 38417512 ~ 38428094 (+)
XLOC_002332 NA coding downstream 397503 38432338 ~ 38433209 (+)
XLOC_002333 BX000451.1 coding downstream 453873 38488708 ~ 38488829 (+)
XLOC_002334 serpinh1a coding downstream 477435 38512270 ~ 38521710 (+)
XLOC_002335 acer3 coding downstream 491661 38526496 ~ 38544426 (+)
XLOC_002321 CT027794.1 non-coding upstream 877261 37147669 ~ 37147784 (+)
XLOC_002317 NA non-coding upstream 960655 36805036 ~ 37064390 (+)
XLOC_002336 BX000451.4 non-coding downstream 513254 38548089 ~ 38548205 (+)
XLOC_002342 CU896636.1 non-coding downstream 648831 38683666 ~ 38683780 (+)
XLOC_002344 CABZ01051877.1 non-coding downstream 714431 38749266 ~ 38760444 (+)
XLOC_002318 BX323076.3 non-coding upstream 1064355 36960576 ~ 36960690 (+)

Expression


Co-expression Network