G394885


Basic Information

Item Value
gene id G394885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35908309 ~ 35918853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448052
TGCTGTAGTGGTAGCAGTAGACGAAACAGCAGTAACTTTCATATTAGTGGTAGTGGAGGTAGAACTGCCAATAGCAGTTACAAACTCATTCAATAACTGCAATTCTCTTAAAACAGGTAAGTGTTCAGGCCTGACCTTGAGCATGAGTCACTCATAGCAGTCAGTTTAGTAGTGGTATAATGCTACCGGTGCAGCAGTGGATAATTGACCATCTTTTtcaactgtttttatttatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgtgacacaaacaacacagagttacacatggaataaacaaacatacagtcaataattcaatagaaaaagtctatatgtgtgtgtgcaaatgaggtaggataagggaggtaaggcaatgaacaggccatagtggcaaaataatgaccttatatagcaattaaacactggagtgataaatgtgcagaagatgagtatCATCCCATTGGTCAGTTCTCTCTCTGAAGACACATGGACACATGCTATGGTCTTAAATCAGTTAATCTGTGCATCTTAAAATTAAACTTGTTTGGCTTTTTAGTATTCCCTTAAGTATATTATCACTTTTCAAATGACCAAGATACCTTTCTCTCATTATTCCTCTCCCTAACATACTCTCTCCATTGGTGGATCCCTACAGCTTCTGCATCAAGGTGTTGTAGAGCTGCTGCTTCTTGTCACTCATGGCCCAGAATGTTGGTCATACACTAGACAACTTCTAAAATCTTAACTTACGTCAGCATTTCCCCCCCTATGACAACGGAGAAAAGCATGGCAGGATCAACTGGGGAATCATTGTGTATTGTGAGCACCCACGTCCTGGGGTTGAGGATGGACGGAATGAAACATTTGGGACAAGGAAATCAGGAAATGTGAGCACGTCCAAGTTGTTAAGATTTTAGAAGttgaggctatctccattttaaaaTAGTACATTTCcttcttcttcattggctgattgctcccaactcataggaatccccactCAGTTGACTATTTTAAAATAGTGGAAGCCCTCAATGCCAAaacatattatatctctctctcatcagtgcattcgtaacaacctagccattatgaaacttctattcaatcaaataagccTCTTGGAGCAAATTAGCAATTCAATGTTTTGTTGACCAATTTCGACACACTCTCATTGACCCCCATACAAAAATTCCTCACCTTGTGGGTTTATtttcgtggacagattttgggcagaGTAAAACCTAtcacttcacctcttcctctctgctgtttcAACCAAGATGACCAATGAAAGCCCTCCCTCTCCCGGTGCCTCTAGCAATGTACTGATGTTGATGGCCAAGAGGTGGCAGTAGAGCAGCGAAGCTCATGTTCTTCAGCTCATGCTCGGCGTTCTGAGCTTTCGGGACAGGCTGCGGTCATTGGCGATAGTCAGAGCGTAGCTGGCAGCAGACACACGGCAGCTCAAGGAGCCACACAAGGTTCCCACAAGTAGTCTGTGAGGCATGGCAACCACTTGACTACCATGAATAATGAATGAGTCACAGGTTCAGCTTACAAAGACCTTTTCAGGTTCAGTCAAACGCTGAATATATTATCATTATTGGAGTGTTAGCAGAAACCTGGCTGGGGTGACTTACACGGCTGATGGTTTTACAAGATCTCCACTAATTCCCCTGGATATTTCTAGAGGCACTTAGGCTAAGTGTCTCGCTCAGAAGACACCCAGCAGTTAGCTAACACAGTAGGATGTGAACCTGTAGTATAATAGACTCGAGTGTACTTCTGTGTATAGTCATTCTTGCATAACCGTCATTCTTCGATTTTGGACTTACGGGAAATTATTATGTTGTAGTCGACCCATTTGTTGAGAATATCATATCGAAGGAACCTGCGATCCTCCACAgaccctatacacacacacacacacaatataaataGGACAATCTAAACTGAATCTATATTTGGGAATCATTTCCCTTCTGGTGACTTAAACCAACAGGTTGAAATCTGTATAATCAAATCAATGTTAAGCCTTAACCATGATGGCGACAGTATGATGTGTCCCACCACTCAGAATGAACAGATGAGTCACTCACCATAGTACACCAGAGAAGCAAGACCTAACTAACAGCTGATTGAAGACGGGACAGCCGGGCATTTGTGCAGTTGACTCTGTTTCCATGGTAACGTGGATTCTTTACAATGTTACGTAACTTTGTTTTTCCTTGCTTTAACAAGGAAACAGGAAAGAGATGGCCTGGATGGTCTTCCCCCAAACCCTGCCAACAGAAGACAGGAGGTGGTTCATTACAAACACTGATTTACAGAGACTGGATTGGCACAACAAAAAGAGAGCCCCGCTTCCCAATCACATTAACACAGGATTTAATCTGTTGTCATGCCATGTGTGCCGAGTCTCAGAGGAGCTGAAATAAACTGTTGGAGACTGGTCAGGAATAACAACTCGCCATTTCATCAGCAAGGATTCCACTCAGGTTGTTCTGGTATAGCAGAGTCAGACAATTTTGACCAATTAGCTGATAAGGCTTCAACTGGAACCTGGAGAGGTCAAAGTAACagaaggatgtgtgtgtgcgttcaaaACTGCCTATGtacataaaatcaaatcaaattttattggtcacatacacgtgtttagcagatgttattgcgggtgtagcgaaatgcttgtgtttctagcttgaacagtggagtaatatctaacaatttcacaacatatacccaatacacacaaatctaagtaaaggaatggaagtAAGAatagttatttccggctgtatgtaataacacaaaaatgtTCTGGACTAACAATGTAAGGaacaatacattaaaaaaacaaaatactgcatagtttacCAAGAGCTAAAAGCaaggcagccctctctgtcggtGCCATTATCAATTATTTCCATGTATTAGATTGTGTTTGTCTATGAAAATCATTCTACATAAATATCTGAATGTGTATGTCAATGAGATGAGTATAAAACCAGCATCTAAACCCACTTGCTGTTGAGGATCTCAGGCTGTTTCTGGAAGCCCTTGTCCCTCTCCACCGCTTGAGTCACGTCCTGCATCATCTTGTTGGTGATGTTCTCACACTTGGTCAAGAGGCCACGTCCTGTTCCCTCAGGACCACACAACAGCCCTGCATCAGGTCAGTGGAGAGGCTGTTCCCTCCGTTGAAAACAGCCACCTGAGggtaca
>TU448049
AATTTTGACCAATTAGCTGATAAGGCTTCAACTGGAACCTGGAGAGGTCAAAGTAACagaaggatgtgtgtgtgcgttcaaaACTGCCTATGtacataaaatcaaatcaaattttattggtcacatacacgtgtttagcagatgttattgcgggtgtagcgaaatgcttgtgtttctagcttgaacagtggagtaatatctaacaatttcacaacatatacccaatacacacaaatctaagtaaaggaatggaagtAAGAatagttatttccggctgtatgtaataacacaaaaatgtTCTGGACTAACAATGTAAGGaacaatacattaaaaaaacaaaatactgcatagtttacCAAGAGCTAAAAGCaaggcagccctctctgtcggtGCCATTATCAATTATTTCCATGTATTAGATTGTGTTTGTCTATGAAAATCATTCTACATAAATATCTGAATGTGTATGTCAATGAGATGAGTATAAAACCAGCATCTAAACCCACTTGCTGTTGAGGATCTCAGGCTGTTTCTGGAAGCCCTTGTCCCTCTCCACCGCTTGAGTCACGTCCTGCATCATCTTGTTGGTGATGTTCTCACACTTGGTCAAGAGGCCACGTCCTGTTCCCTCAGGACCACACAACAGCCCTGCATCAGGTCAGTGGAGAGGCTGTTCCCTCCGTTGAAAACAGCCACCTGAGggtaca

Function

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448052 False 3293 lncRNA 0.42 2 35908309 35918853
TU448049 True 707 lncRNA 0.40 2 35910895 35918853

Neighbor

gene id symbol gene type direction distance location
sppl3 LOC106565002 coding upstream 45683 35824213 ~ 35862626 (+)
si:dkey-106l3.7 LOC106563357 coding upstream 241119 35659228 ~ 35667190 (+)
LOC110523670 LOC106565078 coding upstream 257306 35639728 ~ 35651003 (+)
atp8b5b LOC106565083 coding upstream 287761 35602601 ~ 35620548 (+)
unc13bb LOC106565090 coding upstream 312691 35546545 ~ 35595618 (+)
kcnn2 LOC106564970 coding downstream 11261 35930114 ~ 35960310 (+)
drg1 drg1 coding downstream 44348 35963201 ~ 35966744 (+)
slc20a1b LOC106564912 coding downstream 87353 36006206 ~ 36019354 (+)
you2 you2 coding downstream 114408 36033260 ~ 36034806 (+)
LOC110523693 ggcx coding downstream 123665 36042518 ~ 36056035 (+)
G394883 NA non-coding upstream 2091 35906011 ~ 35906218 (+)
G394881 NA non-coding upstream 5582 35902510 ~ 35902727 (+)
G394879 NA non-coding upstream 6879 35901208 ~ 35901430 (+)
G394870 NA non-coding upstream 22476 35878968 ~ 35885833 (+)
G394869 NA non-coding upstream 30494 35873604 ~ 35877815 (+)
G394904 NA non-coding downstream 24483 35943336 ~ 36035345 (+)
G394923 NA non-coding downstream 59003 35977856 ~ 35983731 (+)
G394958 NA non-coding downstream 180520 36099373 ~ 36108885 (+)
G394970 LOC106563191 non-coding downstream 201453 36120306 ~ 36121931 (+)
G395041 nfkbil1 non-coding downstream 341298 36260151 ~ 36261227 (+)
G394882 NA other upstream 2528 35905112 ~ 35905781 (+)
G392776 NA other upstream 1759608 34147474 ~ 34150795 (+)
G391805 NA other upstream 2546968 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2745329 33158826 ~ 33162980 (+)
G390393 NA other upstream 3687776 32220181 ~ 32220533 (+)
G394910 NA other downstream 48084 35966937 ~ 36004829 (+)
G395005 LOC106564805 other downstream 284048 36202901 ~ 36206616 (+)
G395034 NA other downstream 361447 36280300 ~ 36301290 (+)
G396022 kdm2b other downstream 1046231 36965084 ~ 36965652 (+)

Expression


Co-expression Network