XLOC_002334 (serpinh1a)


Basic Information

Item Value
gene id XLOC_002334
gene name serpinh1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38512270 ~ 38521710 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004439
GACAACCATTCTAATACTCCTTTCTTAACTTCCAGAAGTTTCTTTTCCCATCTATAAAGTCTACGTGAAGGATTTGGTGGTGGGCACGTCGGCATATCCGAGAGGTTGTAGAGAGGTTTTTCAGGAGCTCTGAGAGGCTGTAAACTTACCTCTAAAATCATGTTGGCGTCAAACGTGCTTCTCCTGTGCCTACTGGCCACTGTGAGCGCAAACAAGACCCTGAGCAGCATTGCAACCACGCTAGCCGACAACAGCGCCACACTGGCCTTCAACCTGTATCAAAACATGGCGAAAGATAAGGACATCGAGAACATCCTGATTTCCCCAGTGGTAGTGGCCTCATCGCTGGGTCTGGTGGCTCTTGGAGGAAAATCCAACACTGCTTCTCAGGTCAAAACCGTCTTGAGCGCCGCTTCAGTGAAGGATGAGCAACTCCATTCTGGGCTTTCGGAGCTCCTCACCGAGGTCAGCAACCCAAAGGCACGAAACGTCACCTGGAAGATCAGCAACCGCTTCTACGGGCCCAGTTCTGTTAGCTTCGTTGATGACTTTCTGAAAAGCAGCAAGAAGCATTACAATTACGACCACTCCAAAATTAACTTCCGCGACAAACGCAGTGCGGTGAAAGCCATCAACGACTGGGCATCGAAGTCCACCGATGGAAAGCTGCCGGAGGTGACCAAAGATGTGGAGAAGACAGATGGAGCCATGATCATCAATGCCATGTTTTATAAACCACACTGGAATGAGCAGTTTCATCATAAGATGGTGGACAATCGTGGTTTCTTAGTGCACCGGTCATTCACCGTCTCCGTACCCATGATGCACCGCACAGGCATTTATGGCTTCCTTGATGACACAACCAACAAACTTTTAGTTCTGGAAATGCCGCTGGCCCATAAGATGTCATCTTTAGTCCTTATCATGCCATACCACGTAGAATCACTGGAAAGAGTGGAGAAACTGCTGACACGTCAACAACTGAACACCTGGGTCAGTGCAATGGAACAGAAAGCAGTAGCAATCTCTCTGCCAAAGGTCAGCATGGAGGTCAGCCACAACCTGCAGAAACATCTCGCTGAGCTGGGTCTGACTGAAGCTGTGGATAAGGCCAAGGCTGATCTGTCCAACATCTCAGGGAAGAAAGACCTCTATTTGTCCAATGTTTTCCATGCCTCAGCCATGGAGTGGGACACAGAGGGAAATCCGCCTGATACTAGCATCTTTGGTACAGACCAGCTGAAAAATCCCAAACTCTTCTACGCCGACCATCCTTTTGTCTTCCTGGTGAAAGACAACAAGACAAACTCTATTCTTTTCATGGGCAGGCTGATCCGGCCGAAGGGTGATAAAATGAGGGATGAATTGTAGCGGGTTAATTTAAATGCGAGTGTATGTGGAAGTGTGTGCagatttgtggatgtgtgtaaatggTACACCTTAGTTTGTTCCATCTGTGGACCACTTTGTACTATCTCTTAATCTttaaactagtgctgtcaaacaaTTAACCACACCCAAAATACACGTTTGTATTTAGATTATGGTTGTgtactcattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatacatacatacaaacacaagaaatacaaaactaaaatatttacatatatatttatataatttgtattagatataaatattataaataaatacatatataaaagaacatgtaaatacataaaataataaataaaataaataattacattaactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacatacacacacacaaaataaatatattatgtaaatacaaggTTTTATTTTGGAtacgattaatcgtgattaatatTTTGACAGCACTACTTTAAACCCAaagtatgttttgttttacttgtatGGAAGGCCGTCAGGGCCAAAAAGTTTGAAATCTTCAAATGTGTGTCCCCACAAACGTCACCTCACAATTTCGCAATGTTTCCCAAGTTTGCTTTTATATAAAATTCTTTTGAAGGAAATTTTTACCTTAAGTGAATAGGACAGAGGATAGAATAAAGTGGAAGCAGGAatgtgtggggagcagagagagaggaaCAGGATCGGTTAAGGACCAATTAAACTCGGGTCACCGTGACCACCTCAGTGCTAAATGTTgacacacttaaccactaggctattggtgccgaCTCAAGTATACTTCTTTTTACAGATTTTACAGGTATAAATATTGAATATGGAGGGGTAACGGGAGCCCAAACTTTAAAGACAATACATTAATTTTTATTGCAAGAACGTGCACAGTTTGACCATGTATAggtatgcatttaaacatgtttagttttgtatttgtaaaactAAACAGTATGAGCATATTAAGTCTGTAGTTTTTGCGAAATATGGAAGGCCATTGGGGACAAAAATCTTTATACGTGTGAAACTGATGTGACCTTGCAATTTCACTACGTTTTTCAAGCTTCAAGGCTATCAAAGTCAAAAGTTTTAAGATGATACGTTAACAAATTTATTGTGTAAACATGCACGGTTTGACTATGTAAAAGCaaacatttttacatgtttatttagtaGGCATAAGCATGAATAGTATGATTTTATGACCCAATTTAAACAAGTAAGCAGCATTTATAAAATATGGAAGGTCAATGGAGTCAAAATCTTATGacaatacattacattttattgtttgaACGAGCAGTGTGACTACgtaaaagcagattttaacatgtatattatACATAAGTGCATGTCAAATTTGATTGTGTGAACATGCACAATTTGATCATGTCAAAGCAGCAGATTTGAATATGTTTATTAAGTATGCATAGATTTGCACAGTTTGACCATGCTAAGTATTTTTATGCAACATGCATGCTATGACTGCTAAGATGCCAACTTTGTTTCTTTAGTACGCAGACACAGATAGTTTGATAGCGATGAGGAATCAATGTTTATTGAAAGGCCAGtatataattacaatatttttgtgTGTCTTGTATACATTTATCCCAATGAACCACTGTGCCTAatgcaaaaatagttttaaatacagCAATTTCATTAGTTGTTGTGCTTGTTTGctcattaaaattattaaacgTGTCACAATTAAATTTCATGCATTTCACTTAAAAACTTTTTGGCCCTAATTGCTTTCCATACTGTGCTGATCACAAAATTCCCATCACATGAGTTAAAACTAAGTATACTTTGGGATTAACATTGATAATTGATTTTAGATGCCTCATAATGCTTTCTTATGTCACAGACAATTCCAGTGTACTTGACAGCATCATAATTTCACACCTGAATGGGTTCCTGAGAAGTGCAGCATGCTTATATTAAGTATGATCTCCATGAAATGTCTTAAATCCacacaaaagcatttattttttgctcaggGTTTCTCTTTTTATTTGCGTTTCAATGGCTAGCTTGCATAAGTCACTATGTCAGGTGTTTGATTTCTGAAAAagtctgttttttttacaaagtgcCTGCGAGTTCAACAAAGCATGCTGAAACATTCCTACGCACATTTGCGTCTGCACTGAATACTGTGTCTGCACTATAGACAGTAGTGATATGAGCTCATGTCTGTACCATGTTAAAGCTTGTATTCACATTGTACCAAAACACGGTTGCCTGAAATGTTGGATTGTTCCttgattttacaataaaatcagcATCACTGA

Function

symbol description
serpinh1a Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in collagen fibril organization and negative regulation of endopeptidase activity. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0030199 collagen fibril organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005615 extracellular space cellular_component
GO:0005518 collagen binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-21 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in collagen fibril organization and negative regulation of endopeptidase activity. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

Ensembl:

ensembl_id ENSDARG00000075954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004439 True 3823 mRNA 0.37 5 38512270 38521710

Neighbor

gene id symbol gene type direction distance location
XLOC_002333 BX000451.1 coding upstream 23441 38488708 ~ 38488829 (+)
XLOC_002332 NA coding upstream 79061 38432338 ~ 38433209 (+)
XLOC_002331 samsn1b coding upstream 84176 38417512 ~ 38428094 (+)
XLOC_002330 NA coding upstream 477435 38025045 ~ 38034835 (+)
XLOC_002329 wscd1b coding upstream 503900 37981471 ~ 38008370 (+)
XLOC_002335 acer3 coding downstream 4786 38526496 ~ 38544426 (+)
XLOC_002336 BX000451.4 coding downstream 26379 38548089 ~ 38548205 (+)
XLOC_002337 LO018336.1 coding downstream 38322 38560032 ~ 38586660 (+)
XLOC_002338 mmp13a coding downstream 71935 38593645 ~ 38602561 (+)
XLOC_002339 mmp13a coding downstream 89031 38610741 ~ 38620514 (+)
XLOC_002327 NA non-coding upstream 622709 37865419 ~ 37889561 (+)
XLOC_002325 NA non-coding upstream 1033714 37478245 ~ 37478556 (+)
XLOC_002342 CU896636.1 non-coding downstream 161956 38683666 ~ 38683780 (+)
XLOC_002344 CABZ01051877.1 non-coding downstream 227556 38749266 ~ 38760444 (+)
XLOC_002346 NA non-coding downstream 562302 39084012 ~ 39087853 (+)
XLOC_002354 NA non-coding downstream 807592 39329302 ~ 39393816 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location