XLOC_023388 (tnfrsf11a)


Basic Information

Item Value
gene id XLOC_023388
gene name tnfrsf11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18485866 ~ 18510631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046248
CGGCGTGGGTGAGTGAATGAACACTGACATGAACTGTGGGAAAGAAGCGCAGCAGTCTGGAGCTTCATCCCATCCCAGAGCGCACACCCTTCTGCTGCTGATCCCGGCAGGACAATACAACAAACAGCACTGAAGCTGCGATTACCGAGCCCTCTTTTAACGTTTACAACAATGAGGGTGATTTTTTCAGCTAGTTGGATATTTCAAGGATGGATCACATACTTTGTTCTTGCCCTGTGCACTCAGACAGGACAGGCCATAAGCTGCCAACAAAACGAGTATGTGTACAACGGGAGATGCTGCGAAAAATGCAAAGCAGGAACACACGTACTTGAACATTGCAATGGGCGTTCGAAAACAAGATGCTTTGATTGTGGTTTTGATCAGTATCAGCCGGATTGGAACAACAAAATGTATTGTATTTCTCAGAAGTACTGTGATGAGGGTAAAGGTTTTAACCGCACCCGTCCACAAAACCCCACAGCGCCTGAACCGTGTCGCTGTAAACAAGGCTTCCATTGCTCTCTGATCAACTGCGAATACTGTGAGGCCATTGAGGAATGTCCTCCGGGAAAAGGAGTCGTGATGGGTGTAAACGGCAGAGCTTCCTGTGTGTCCTGTCCAGCGGGAACATTCTCAGACTCTCTATCAAAAGAATCCTGCAAGAAGTGGACAGATTGTAAAGCTATCGGCAAGACTGAGAAGCAGTTAGGAAGCACAACGACAGATGCAGTGTGTGGACTCCATTCTTCTGGTATGACGCCCTGGGTTGTGGTGGCCATCCTCTCGGTCATCATCGTGGTTTCTCTGGTCGTCCTCTGCTTGTTTTGCTGCAAGGATAAGCTGAACTTCCTATCAGTAAATCTACGCACGTGCGTCCAAAACCTGAAAGGAACTAGAAATCAACAGGAAACTCTGACGAACTCATACCACTGCAGCCACTCTCCCCAAACCCTCCCTTTAATTTGCCAAGAACTGACCCCTCCTGAATTCCTCATCAACTGTCCCAGCACCCACATAACCATCTCTGATGAACTGCTGCCTTACACCAACCAAGACCAGGATCAGGACTGTGCTGAAACCTCATCAGGTGGCTCCAGCGAGGACTCCGGATGTGGACCATCATCACCCCTGTCAGGAAGCTCCTGCAGCTGTGCTCCGAAGGAGCCTGTAGAGGTGGGAGAAAACGAAGACTGCAGTCAGCTGGTGGCCACAGGTTTAGCCACATGCTGCTCCTGCAGGACTGGAGACGAAACTGCAGAACACGAGCAGGTTATCATCCTGAAAGAGCCTCTGCTGTGCGACGGCTTGCCTGCATGCGATTACGTTCATCTCCATCGCTCTCAGGAGCTTTATCTGGACTTCAGCAGTCCCGCTGGAAAGGACGCCATGTCGGAGATGAGAGATGATCGAGGTCTAGTTGAAGGGTCGTACAGACAGAATGAACCACGCTGCTGCAGTATAGACTCCACCACCATTCCGTCACTGTTGTCGGTCAGCGATAACGATCAGGGCCTTTCGTTGATCCACAGCGATGAGCACAAACTGTCCGAGCTGGACACAGATGAGGACTACCAGAATCAGTGCTCTGATTCTGCTCTCACATCTGGTCAGGTGACAGGAAACAACAACACTACCTTTATCTCCAGCGGGCAGGTGATGAACTTCAGCGGCGAGGTGATCGTGGTTTATGTTAGCCAGACATCGCTAGGCAGCAGCGGAGGAACAGACGAACCCTTCAGCTGCCCCGTCCAGGAGGAATCCAACGAGGACAGCCTTCAAAACCAACCCAAATCCAACAGTAGCACAGCACCGCCGGCCAAAACCCGAAACGCACGCCTGGAGAAACAACTGCCTGTGCAGGAGATGACCAGTGACTTGTCCTGGCAGAAATAAACAACATTAAAGATTTCCTACTAAAGTGGAATTAATGATgtttattgattggtgattggcGTCTGATAGCCCTTATAGCAACTTAGAGTGCTATTTCATGAAAAAATGCTATGCATTTGTTGACCTATGTATTTATATGCTATAAATTAGGTACTTCTCGACTGGTGTGgatgctaatgagctgatgacaAGAAAAGTCAAGGACATTGAACCTCTGAATGTCTCATTTTCAGACAATCTCTGTGTTGAGGAGCCAAATGAAGAGTGGCTCGATGCGACGAGAAGCCAAACTCAGGCCAAAAATGATGAAGACACAGCCAGCAAAAGCACAAACGCAGCCATCACAACAAAAGCATGGTGCTTAttgttgtctttttcttttcgtTTGCTCTGAAACTAATCGGTCGCACTATACCTCATGGAGAGAAGCGTTTTAGGATGATGGTTGTATCTAAGACTGAAGGCCTGTTCACAACAAGAATGATAACTAGATTAATAACTACATTTGGGAACGCAATGAACCATACTATTCTGTTAATTAAAAGAGAAAGCTTCAGCTGCTGTTTCAATGCTCAAGGTTTTTAATGTGAATGCCTGTTTCTGCCTATATTTGTGAGATAATATTGAGTCGCAATAGGAAGTATCGCAATAAGCAAACTCTCACTATTGTGACTGTTCCCATGTATAAACACTATTGTGCGAAATCTGTTTGCTACTTTGAAAACGTAATCTTTCTGTCTCAATTTTTACACCAAGTTTACAGCTAAGAATTGCTATGCAAACAAACATGGAATTAAAAAGTCATGATtagagttattattttttatccttTGGGATTCCATGCATTTAGGGTGGATTCTGACTGGTTGTGGAAGTTTTTATAGGTCTGAAATATTCCAAAACATGGTTATCATGTGGTGTCAATTTTGCTTTCTTTTAAGAGTTTATGAAACTCTTTGGTGTGGATGGGACTATTATCCTTAGATGAAGAGACAGTTTGCCCAAATATTTGAATTTACTCACCccttaagtggttctaaaccttcaAGACTTCCAAACCTTCAAAAGGATATTTGAAACAATGTTGAAAACCCAAAACCACTGACATATtgttgaaaaatataaatatattatgaaagtcaatggctaatGTTTTGATCATTCTACAAAATTATTTGGTACAactgaagggagagtaaatgttgacagaaaaaAGCAATAAGCCCCAACAGCTTGTGGTTTACTGTGAATTTATAACAGCTTGAAGAGCTCACTGTAAACCATAGCTTCACTGCAGCAAAAAAGACTCTTCTGCTTGTCACTGATGGAGTAATGGTGGCCAAGaactgtatatttgtattttacagcAGCTCAACCAATCAAAATTGTTTTGTAGACCATTTTGGTGAATTTAATGGTCctgacgtatttcctgttttatattttaaatttccatagcttctgagGGTCCAAAAAGTTCCACATATTGACAAATAATGTTACGATAGCTGTTACAACATCAAGTTCTGATTGAATCACCTCTTGTTACAGATATGAagttgataacaagcaggaaatgttcatgggccaatgacaccaCATGGAAATGGtctataatttttgtttttgggtaaactatctctttaagcaagtaaaatgaaaataagaaacAGGGAAGTTGATTTGTGGtgtttattttttgaataaaatctaattttgaaatgtaaa

Function

symbol description
tnfrsf11a Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Paget's disease of bone; autosomal recessive osteopetrosis 7; bone development disease; familial expansile osteolysis; and osteoporosis. Orthologous to human TNFRSF11A (TNF receptor superfamily member 11a).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04917 Prolactin signaling pathway
ko04380 Osteoclast differentiation
ko05323 Rheumatoid arthritis
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-120910-2 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Paget's disease of bone; autosomal recessive osteopetrosis 7; bone development disease; familial expansile osteolysis; and osteoporosis. Orthologous to human TNFRSF11A (TNF receptor superfamily member 11a).

Ensembl:

ensembl_id ENSDARG00000087804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046248 True 3624 mRNA 0.43 10 18485866 18510631

Neighbor

gene id symbol gene type direction distance location
XLOC_023387 si:dkey-73n8.3 coding downstream 375 18469766 ~ 18485491 (-)
XLOC_023386 zgc:112332 coding downstream 18802 18448108 ~ 18467064 (-)
XLOC_023385 sec61g coding downstream 39262 18444189 ~ 18446604 (-)
XLOC_023382 cntnap2a coding downstream 306331 17417150 ~ 18179535 (-)
XLOC_023389 relch coding upstream 9771 18520402 ~ 18685009 (-)
XLOC_023390 CR376786.1 coding upstream 114621 18625252 ~ 18625367 (-)
XLOC_023391 arfgef1 coding upstream 226285 18736916 ~ 18877118 (-)
XLOC_023392 cpa6 coding upstream 369623 18880254 ~ 18919649 (-)
XLOC_023393 CR384092.1 coding upstream 778023 19288654 ~ 19288768 (-)
XLOC_023665 dre-mir-735 misc upstream 19667330 38177961 ~ 38178027 (-)
XLOC_023384 NA non-coding downstream 463652 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 non-coding downstream 938997 17546753 ~ 17546869 (-)
XLOC_023381 NA non-coding downstream 1071920 17409308 ~ 17413946 (-)
XLOC_023380 NA non-coding downstream 1079383 17403470 ~ 17406483 (-)
XLOC_023378 NA non-coding downstream 1249666 17233526 ~ 17236200 (-)
XLOC_023395 NA non-coding upstream 1448285 19958916 ~ 19962882 (-)
XLOC_023397 CR381686.1 non-coding upstream 1521700 20032331 ~ 20054257 (-)
XLOC_023398 NA non-coding upstream 1550060 20060691 ~ 20063050 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_02931983_02940190 NA coding CI01000018 null 2931926 ~ 2940420 (-)