Fish Transcriptome and Expression Database

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model fish

XLOC_023390 (CR376786.1)

Basic Information

Item	Value
gene id	XLOC_023390
gene name	CR376786.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	18625252 ~ 18625367 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046256
gctagcagctagctctctgcaccTCTCACATgttcgcccactgaagctaagcagggctgcgcccggccATTAACTGGAtagggagaccacatgggaaagctaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108928

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00046256	True	116	rRNA	0.56	1	18625252	18625367

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023388	tnfrsf11a	coding	downstream	114621	18485866 ~ 18510631 (-)
XLOC_023387	si:dkey-73n8.3	coding	downstream	139761	18469766 ~ 18485491 (-)
XLOC_023386	zgc:112332	coding	downstream	158188	18448108 ~ 18467064 (-)
XLOC_023385	sec61g	coding	downstream	178648	18444189 ~ 18446604 (-)
XLOC_023384	NA	coding	downstream	603038	18021574 ~ 18022214 (-)
XLOC_023391	arfgef1	coding	upstream	111549	18736916 ~ 18877118 (-)
XLOC_023392	cpa6	coding	upstream	254887	18880254 ~ 18919649 (-)
XLOC_023393	CR384092.1	coding	upstream	663287	19288654 ~ 19288768 (-)
XLOC_023394	csrnp1b	coding	upstream	1082242	19707609 ~ 19719240 (-)
XLOC_023395	NA	coding	upstream	1333549	19958916 ~ 19962882 (-)
XLOC_023665	dre-mir-735	misc	upstream	19552594	38177961 ~ 38178027 (-)
XLOC_023383	CR376742.1	non-coding	downstream	1078383	17546753 ~ 17546869 (-)
XLOC_023381	NA	non-coding	downstream	1211306	17409308 ~ 17413946 (-)
XLOC_023380	NA	non-coding	downstream	1218769	17403470 ~ 17406483 (-)
XLOC_023378	NA	non-coding	downstream	1389052	17233526 ~ 17236200 (-)
XLOC_023397	CR381686.1	non-coding	upstream	1406964	20032331 ~ 20054257 (-)
XLOC_023398	NA	non-coding	upstream	1435324	20060691 ~ 20063050 (-)
XLOC_023400	NA	non-coding	upstream	1556630	20181997 ~ 20185025 (-)
XLOC_023382	cntnap2a	coding	downstream	445717	17417150 ~ 18179535 (-)

Expression

Co-expression Network