XLOC_023394 (csrnp1b)


Basic Information

Item Value
gene id XLOC_023394
gene name csrnp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 19707609 ~ 19719240 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046265
AACTGAAGTAAATTAATATTCTCATTCCACTCGGTTTGTTACAATCTCACGGCATTCCTTTTGTCAGATCACCAAACGCTTGCGCCATGAGCGGGGTTCTCAAGAGGAAGTATGAGGAGGTGGCGGAGGACCCGTGCTACTCCTCCTCATCCCCctcctctctctcctcctctgccTACTCAGAGTGGGACTCAGATGGGGAGAGCTGCTACTCGGACACCCTGGATTCGACCCCCAGTAACCCTAGCTCCCCAGCAACATCCTTAAACACAACATCTATCCTGAAGAAGGCTAAGCGCACACGGCGAGGCAACGTGCAGTTTGACCAGGTTACGGTTTTCTTCTTTCCTCGTTGCCAGGGCTTCACCAGCGTGCCCAGTCGGGGAGGTTGCACCCTTGGCATGATGCAAAGGCACAGTGCCCAACGTCGCTACACATTGGCAGAGTTTGCGATAGCACAGCGCCACCTACGGCGAGAGAAACTCAAAAATCGAATGAGGGAGGAAAAACTGGAAGCCCTTAAGCTAAAGCTCACCAAAAACGGTACCCAAGAGTCTGAAGAAGCTGAAAAGTTAACTGTCGATGATATCCCAGAGGATGAAATTGACCTCAGTGGAGTAAATGTGGATGACGGCTCCTTCCTGCATCCATACCCCTCAAAGAAAAGGTACGCCATCCTTAAAGCTGCTGGTGTGAAGAAAATCGATAGAGAAGAGAAACGTCAACTTCATGAGCTGCGGACATCGAGAGAAGACTGCGGATGTGACTGTCAAGGCTTCTGTGAGCCAGAGACCTGCAGCTGTAGTTTGGCTGGGATCAAATGTCAGATGGACCACTCATCCTTCCCATGTGGCTGCACTAAAGATGGCTGTGGGAACACACAAGGTCGCATCGAGTTCAACTCTAGCCGAGTTCATACCCACTACATCCACACTATCATGAAGCTGGAGCTGGAAAAACGCTTGGAGGAGCACACGACAGAGACGCCTCCTGAAACTCATCCAGACAGCAGTTCCCTAAACCAACCAGCAGAGATCAGCAGCACGCCAGACATGCCAACATTTCACTTTAACTCAGAGCTACTATCCACAGGAGAGAACAGCTGCAGCAGTGACATGACCGATTCGTCTAGTTCCTCAGGCCAGAGCGAGGATTCTGAATCTGTTGAAAATGTTCCAAGTGAACAGTCGCCGCTGGACGTTGACGAAAACGGACTTACAAGAATCCTAAGCTTTAGCGACACAGACAATGAAGACTGTTCTATCAGGGAGCGCAATGACAACTGTGACTACCAACAGAAAAAGAGCGAAGGGTCGATGGGTTATGGCATCTTCAGTACAGAGGACGACAAGCTCAACATGTCACAAACAGACAACAGTCGCACAGCCATGTCTGAACTTTTAGACGAGAACGCTAATCAAGGTAACGGACTATTCCACAGCAGCTTCATCCCACATACGCCCTCGCCTTCCATCGATCATTCGGCCAGCTACATGGACCTTAGCCTGTCATCCGAGTCAGACTTAGAATTCTTTGATGGATTTCCTTGTTTGGGACCGAGCTCGCTATACAACTCCCTAAAGGAGTATGAGCACGTGGACAACTTCTTTCAGTTCCAGTTGCCTACCTACCCCAGCCTTCCTCAAGCTGTCGACCCAGGAACATGTCTCCTGGAGTCTCTGATCGGCTTGTCAGATTCTGTCCCAGAACCTCCGACTACTTTCACGGACAATCAAATGCTAGAAGATGCCATGAAGCTGTCAGTGATGGAGTCTTTAAAGGTCTAATGGGGGACTCTTGTATGATCACTGTATAAATGAACTATGGGATTGTAAA
>TCONS_00046266
AACTGAAGTAAATTAATATTCTCATTCCACTCGGTTTGTTACAATCTCACGGCATTCCTTTTGTCAGATCACCAAACGCTTGCGCCATGAGCGGGGTTCTCAAGAGGAAGTATGAGGAGGTGGCGGAGGACCCGTGCTACTCCTCCTCATCCCCctcctctctctcctcctctgccTACTCAGAGTGGGACTCAGATGGGGAGAGCTGCTACTCGGACACCCTGGATTCGACCCCCAGTAACCCTAGCTCCCCAGCAACATCCTTAAACACAACATCTATCCTGAAGAAGGCTAAGCGCACACGGCGAGGCAACGTGCAGTTTGACCAGGTTACGGTTTTCTTCTTTCCTCGTTGCCAGGGCTTCACCAGCGTGCCCAGTCGGGGAGGTTGCACCCTTGGCATGATGCAAAGGCACAGTGCCCAACGTCGCTACACATTGGCAGAGTTTGCGATAGCACAGCGCCACCTACGGCGAGAGAAACTCAAAAATCGAATGAGGGAGGAAAAACTGGAAGCCCTTAAGCTAAAGCTCACCAAAAACGGTACCCAAGAGTCTGAAGAAGCTGAAAAGTTAACTGTCGATGATATCCCAGAGGATGAAATTGACCTCAGTGGAGTAAATGTGGATGACGGCTCCTTCCTGCATCCATACCCCTCAAAGAAAAGGTACGCCATCCTTAAAGCTGCTGGTGTGAAGAAAATCGATAGAGAAGAGAAACGTCAACTTCATGAGCTGCGGACATCGAGAGAAGACTGCGGATGTGACTGTCAAGGCTTCTGTGAGCCAGAGACCTGCAGCTGTAGTTTGGCTGGGATCAAATGTCAGATGGACCACTCATCCTTCCCATGTGGCTGCACTAAAGATGGCTGTGGGAACACACAAGGTCGCATCGAGTTCAACTCTAGCCGAGTTCATACCCACTACATCCACACTATCATGAAGCTGGAGCTGGAAAAACGCTTGGAGGAGCACACGACAGAGACGCCTCCTGAAACTCATCCAGACAGCAGTTCCCTAAACCAACCAGCAGAGATCAGCAGCACGCCAGACATGCCAACATTTCACTTTAACTCAGAGCTACTATCCACAGGAGAGAACAGCTGCAGCAGTGACATGACCGATTCGTCTAGTTCCTCAGGCCAGAGCGAGGATTCTGAATCTGTTGAAAATGTTCCAAGTGAACAGTCGCCGCTGGACGTTGACGAAAACGGACTTACAAGAATCCTAAGCTTTAGCGACACAGACAATGAAGACTGTTCTATCAGGGAGCGCAATGACAACTGTGACTACCAACAGAAAAAGAGCGAAGGGTCGATGGGTTATGGCATCTTCAGTACAGAGGACGACAAGCTGTCGACCCAGGAACATGTCTCCTGGAGTCTCTGATCGGCTTGTCAGATTCTGTCCCAGAACCTCCGACTACTTTCACGGACAATCAAATGCTAGAAGATGCCATGAAGCTGTCAGTGATGGAGTCTTTAAAGGTCTAATGGGGGACTCTTGTATGATCACTGTATAAATGAACTATGGGATTGT
>TCONS_00046267
TGCTTTCTTCCTTTGATAGCTCACCAAAAACGGTACCCAAGAGTCTGAAGAAGCTGAAAAGTTAACTGTCGATGATATCCCAGAGGATGAAATTGACCTCAGTGGAGTAAATGTGGATGACGGCTCCTTCCTGCATCCATACCCCTCAAAGAAAAGGTACGCCATCCTTAAAGCTGCTGGTGTGAAGAAAATCGATAGAGAAGAGAAACGTCAACTTCATGAGCTGCGGACATCGAGAGAAGACTGCGGATGTGACTGTCAAGGCTTCTGTGAGCCAGAGACCTGCAGCTGTAGTTTGGCTGGGATCAAATGTCAGATGGACCACTCATCCTTCCCATGTGGCTGCACTAAAGATGGCTGTGGGAACACACAAGGTCGCATCGAGTTCAACTCTAGCCG
>TCONS_00046268
GCTCCGCGTCTGCTTCAGACAAGAGGAACAGCTTCAGCTGCCGCTCCAGTCCGCCGAGCGCACAATAGCCGCACGAACACAACGGGATCTCTTTACGGATAAACGCGCGATCGCATCTCTTGGATTATTACAGCTTCATCTTTTCCTAGATAGTGATTTACTAATGCTGATCGGACACGTTATTGATCACCAAACGCTTGCGCCATGAGCGGGGTTCTCAAGAGGAAGTATGAGGAGGTGGCGGAGGACCCGTGCTACTCCTCCTCATCCCCctcctctctctcctcctctgccTACTCAGAGTGGGACTCAGATGGGGAGAGCTGCTACTCGGACACCCTGGATTCGACCCCCAGTAACCCTAGCTCCCCAGCAACATCCTTAAACACAACATCTATCCTGAAGAAGGCTAAGCGCACACGGCGAGGCAACGTGCAGTTTGACCAGGTTACGGTTTTCTTCTTTCCTCGTTGCCAGGGCTTCACCAGCGTGCCCAGTCGGGGAGGTTGCACCCTTGGCATGATGCAAAGGCACAGTGCCCAACGTCGCTACACATTGGCAGAGTTTGCGATAGCACAGCGCCACCTACGGCGAGAGAAACTCAAAAATCGAATGAGGGAGGAAAAACTGGAAGCCCTTAAGCTAAAGCTCACCAAAAACGGTACCCAAGAGTCTGAAGAAGCTGAAAAGTTAACTGTCGATGATATCCCAGAGGATGAAATTGACCTCAGTGGAGTAAATGTGGATGACGGCTCCTTCCTGCATCCATACCCCTCAAAGAAAAGGTACGCCATCCTTAAAGCTGCTG

Function

symbol description
csrnp1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within diencephalon development and midbrain development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural rod; axial mesoderm; axis; nervous system; and trunk. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1).

GO:

id name namespace
GO:0021536 diencephalon development biological_process
GO:0030901 midbrain development biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1515 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within diencephalon development and midbrain development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural rod; axial mesoderm; axis; nervous system; and trunk. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1).

Ensembl:

ensembl_id ENSDARG00000038429

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046265 False 1836 mRNA 0.50 5 19707609 19718077
TCONS_00046266 False 1538 mRNA 0.50 6 19707612 19718077
TCONS_00046267 False 399 lncRNA 0.48 2 19708535 19709047
TCONS_00046268 True 808 mRNA 0.52 4 19708869 19719240

Neighbor

gene id symbol gene type direction distance location
XLOC_023393 CR384092.1 coding downstream 418841 19288654 ~ 19288768 (-)
XLOC_023392 cpa6 coding downstream 787960 18880254 ~ 18919649 (-)
XLOC_023391 arfgef1 coding downstream 830491 18736916 ~ 18877118 (-)
XLOC_023389 relch coding downstream 1022600 18520402 ~ 18685009 (-)
XLOC_023390 CR376786.1 coding downstream 1082242 18625252 ~ 18625367 (-)
XLOC_023395 NA coding upstream 239676 19958916 ~ 19962882 (-)
XLOC_023396 slc22a13b coding upstream 287471 20006711 ~ 20016817 (-)
XLOC_023397 CR381686.1 coding upstream 313091 20032331 ~ 20054257 (-)
XLOC_023398 NA coding upstream 341451 20060691 ~ 20063050 (-)
XLOC_023399 oxsr1b coding upstream 344848 20064088 ~ 20152965 (-)
XLOC_023665 dre-mir-735 misc upstream 18458721 38177961 ~ 38178027 (-)
XLOC_023384 NA non-coding downstream 1685395 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 non-coding downstream 2160740 17546753 ~ 17546869 (-)
XLOC_023381 NA non-coding downstream 2293663 17409308 ~ 17413946 (-)
XLOC_023400 NA non-coding upstream 462757 20181997 ~ 20185025 (-)
XLOC_023401 BX247944.1 non-coding upstream 468076 20187316 ~ 20187430 (-)

Expression


Co-expression Network