XLOC_023396 (slc22a13b)


Basic Information

Item Value
gene id XLOC_023396
gene name slc22a13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20006711 ~ 20016817 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046269
aaaaattaatttgcGTCCGTTTAAAAGCGCACCGCCGCCGCTAATGGTCGCCAGAAGATCATGATCGACTTCACGCAGATTTTGTCATCGGTCGGCGAATTTGGCGCGTTTCAGAAGCGCTTGTTGGTGGCGGTATGTCTCCCCAACATTTTCACCGCCTTCCACATGTTCGGCCAGGTGTTCACCGCCATCAGCTTCCCGCACTACTGCAACAGCAGCTGGATCCTCCGACAGGCTCCAAACCTTACCGAGGAAAAGCAGCTGAACCTCACCGTCCCGCTGGACAGCAAAGGACAGTATGAGAGTTGTAAGATGTTCACACCTGTAGAGATGGATATTGAGGATATTGAACATTATGGAATAAACACAACTACATCGTGTATTGATGGATGGGTTTATAAGGCACCGAAAGACAGCAGCACACTTATAACTGAGTTTGACCTGGTGTGTGAAAATAAGGTTTATAGTGAGGCTTCTCAGTCCATCTACATGGCTGGTCTTCTTGTTGGAGCCCTATTGTTTGGGCCAATGGCAGACAAgtATGGCCGGCGGTTTGCCACACTGCTTTCCTTGTTTCTGCAGTTTCTGTCTGGAGTGGGAGTTGCATTTTCCCCTAACATCTATGTCTACATTGCCCTCCGTTTTGTTGTTGGCACCACAATATCCGGGATCTCTATCAACACATTTGTTCTGGGTACTGAGTGGTGTGGTTCAGCCAAGCGGGCCCTTTTCACCATATTATCGCACTGCTTTTTTGCCATTGGTCTGATGTTGCTGTCTGGTGTGGCCTATGGGATTCGAAACTGGAGGGTTTTACAGCTGGTTTTGTCAGCACCAGTTGGGCTTTTCTTTATCTATTACTGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACACAAGGAAAACTAGACAGTGCCAAGAGAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTGAAAATCTGCTTGATAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTTCCGAGTGGGTTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACATCCCTGGTTTACTATGGTGTCAGCTTGAATGTGGGGAACTTCGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATGGCAGAGTTTCCTGCACGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGACGGAGAATTTGCCAAAGTGTCGTTTTGCTGCTAGGAGGCACAGCCTGCCTGATTATTCCTGCTATCCCAGCAAAATATCCTATAGTTGTGACTGTGATCGCTGTAATTGGGAAGTTTTCACTCGCTGCCTCCTTCTCCATTGTATACGTGTACACCGCTGAGCTCTACCCAACAGTTGTGAGGCAGAATGGGGTGGGCCTGAACTCCATGTGTGCCCGTGTGGCTGGTATTCTGGCTCCTCTGATTGGCTTGTTGGACGTTTATCATCATGCCATTCCTATGATCATATACGGCTCGCTGCCTTTTGTTGGAGGAGCTCTGACCTTCCTGCTTCCAGAAACACTGAACACTGACCTACAGGACCACACGGATATCCCTGCGGATGAGAGCATgggATCAAAAAAAGCCAGTATTGAAAATGGACTGAATCAGGAGCAAGGAATGGCTCTCAGGAGCACAAAATTATGAGATTTATACTGCTGTTGATGACAATGATAGATTTTATCAATAAGTGTGAATGACTCAAATCAAACTTCTCATATTTTCAGGTTTACCTTTCATGCTGCAAGTATCatgtttgtaaagttttattgattAAAATGAATTTGTACTTTTTTATCCTTTCAATACAAAAAGTAAACATCAGCGAT
>TCONS_00046270
aaaaattaatttgcGTCCGTTTAAAAGCGCACCGCCGCCGCTAATGGTCGCCAGAAGATCATGATCGACTTCACGCAGATTTTGTCATCGGTCGGCGAATTTGGCGCGTTTCAGAAGCGCTTGTTGGTGGCGGTATGTCTCCCCAACATTTTCACCGCCTTCCACATGTTCGGCCAGGTGTTCACCGCCATCAGCTTCCCGCACTACTGCAACAGCAGCTGGATCCTCCGACAGGCTCCAAACCTTACCGAGGAAAAGCAGCTGAACCTCACCGTCCCGCTGGACAGCAAAGGACAGTATGAGAGTTGTAAGATGTTCACACCTGTAGAGATGGATATTGAGGATATTGAACATTATGGAATAAACACAACTACATCGTGTATTGATGGATGGGTTTATAAGGCACCGAAAGACAGCAGCACACTTATAACTGAGTTTGACCTGGTGTGTGAAAATAAGGTTTATAGTGAGGCTTCTCAGTCCATCTACATGGCTGGTCTTCTTGTTGGAGCCCTATTGTTTGGGCCAATGGCAGACAAgtATGGCCGGCGGTTTGCCACACTGCTTTCCTTGTTTCTGCAGTTTCTGTCTGGAGTGGGAGTTGCATTTTCCCCTAACATCTATGTCTACATTGCCCTCCGTTTTGTTGTTGGCACCACAATATCCGGGATCTCTATCAACACATTTGTTCTGGGTACTGAGTGGTGTGGTTCAGCCAAGCGGGCCCTTTTCACCATATTATCGCACTGCTTTTTTGCCATTGGTCTGATGTTGCTGTCTGGTGTGGCCTATGGGATTCGAAACTGGAGGGTTTTACAGCTGGTTTTGTCAGCACCAGTTGGGCTTTTCTTTATCTATTACTGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACACAAGGAAAACTAGACAGTGCCAAGAGAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTGAAAATCTGCTTGATAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTTCCGAGTGGGTTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACATCCCTGGTTTACTATGGTGTCAGCTTGAATGTGGGGAACTTCGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATGGCAGAGTTTCCTGCACGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGACGGAGAATTTGCCAAAGTGTCGTTTTGCTGCTAGGAGGCACAGCCTGCCTGATTATTCCTGCTATCCCAGCAAGTGAGAGACACTAGTTTgcccaaaatt
>TCONS_00046271
aatatattaaatatttaattttatttattacatgtttGGCAGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACACAAGGAAAACTAGACAGTGCCAAGAGAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTGAAAATCTGCTTGATAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTT

Function

symbol description
slc22a13b Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; heart; pleuroperitoneal region; and skeletal muscle. Orthologous to several human genes including SLC22A13 (solute carrier family 22 member 13).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-532 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; heart; pleuroperitoneal region; and skeletal muscle. Orthologous to several human genes including SLC22A13 (solute carrier family 22 member 13).

Ensembl:

ensembl_id ENSDARG00000059166

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046269 False 1871 mRNA 0.46 10 20006711 20016817
TCONS_00046270 False 1321 mRNA 0.48 7 20010052 20016817
TCONS_00046271 True 210 lncRNA 0.40 2 20010582 20012032

Neighbor

gene id symbol gene type direction distance location
XLOC_023395 NA coding downstream 43829 19958916 ~ 19962882 (-)
XLOC_023394 csrnp1b coding downstream 287471 19707609 ~ 19719240 (-)
XLOC_023393 CR384092.1 coding downstream 717943 19288654 ~ 19288768 (-)
XLOC_023392 cpa6 coding downstream 1087062 18880254 ~ 18919649 (-)
XLOC_023391 arfgef1 coding downstream 1129593 18736916 ~ 18877118 (-)
XLOC_023397 CR381686.1 coding upstream 15514 20032331 ~ 20054257 (-)
XLOC_023398 NA coding upstream 43874 20060691 ~ 20063050 (-)
XLOC_023399 oxsr1b coding upstream 47271 20064088 ~ 20152965 (-)
XLOC_023400 NA coding upstream 165180 20181997 ~ 20185025 (-)
XLOC_023401 BX247944.1 coding upstream 170499 20187316 ~ 20187430 (-)
XLOC_023665 dre-mir-735 misc upstream 18161144 38177961 ~ 38178027 (-)
XLOC_023390 CR376786.1 non-coding downstream 1381344 18625252 ~ 18625367 (-)
XLOC_023384 NA non-coding downstream 1984497 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 non-coding downstream 2459842 17546753 ~ 17546869 (-)
XLOC_023407 NA non-coding upstream 433210 20450027 ~ 20531813 (-)

Expression


Co-expression Network