XLOC_023397 (CR381686.1)


Basic Information

Item Value
gene id XLOC_023397
gene name CR381686.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20032331 ~ 20054257 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046272
CAGCTGGATCCTCCGACAGGCTCCAAACCTCACCGAGGAAAAGCAGCTGAACCTCACCGTCCCGCTGGACAGCAAAGGACAGTATGAGAGCTGTAGGATGTTCACACCTGTAGAGATGGATATTGAGGATATTGAACATTATGGAATAAACACAACTACATCTTGTATTGATGGATGGGTTTATAAGACACCgaaaagcagcagcagcacactTATAACTGAGTTTGACCTGGTGTGTGAAAATAAGGTTTATAGTGAGGCCTCTCAGTCCATCTACATGGCTGGTCTTCTTGTTGGAGCCCTATTGTTTGGTCCAATGGCAGACAAGTATGGCCGGCGGTTTGCCACACTGCTGTCCTTGCTCCTGCTGTTTTTGTCTGGAGTGGGAGTTGCATTTTCCCCTAACATCTATGTCTACATGGTCCTTCGTTTTGTTGTTGGCACCACAATATCTGGGATCTCTATCAACACATTTGTTCTGGGTACTGAGTGGTGTGGTTCAGCCAAACGGGCCCTTTTCACCATATTATCGCACTGCTTTATTGCCCTTGGTCAAATGTTGCTGTCTGGGGTGGCCTATGGGATTTGAAACTGGAGGGTTTTACAACTGGTTTTATCAGCGCCAGTTGGGCTTTTCTTTGTCTATTACTGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACTCAAGGCAAACTAGACAGTGCCAAGAAAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTATAAATCTGCTTGACAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTTCCGAGTGGCTTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACATCACTAGTTTACTATGGTGTCAGCTTGAATGTGGGGAACTTCGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATGGCAGAGTTTCCTGCACGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGACGGAGAATTTGCCAGAGTGTCTTTCTGCTACTTGGAGGCACAGCCTGCCTGATTATTCCTGCTATTCCAGCGAAATATCCTATAATTGTGACTGTAACCGCAGTGTTTGGGAAGTTTTCAATTTCTGCGGCCTTCTCCATTGTATACGTGTACACCGCTGAGCTCTACCCAACAGTTGTGAGGCAGAATGGGGTGGGCCTGAACTCCATGTGTGCCCGTGTGGCTGGTATTCTGGCTCCTCTGATTGGCTTGTTGGACGTTTATCATCATGCCATTCCTATGATCATATACGGCTCGCTGCCTTTTGTTGGAGGAGCTCTGACCTTCCTGCTTCCAGAAACACTGAACACTGACCTGCAGGACCACACAGATATCCCTGCGGATGAGAGCATGGGATTAAATAAAGCCAGCATTGAAAAAGGACTGAATAAGGAGCAAGGACTGGTTCTCAAGAGCACAAAATTTTGAGATTTGTACTGCTGTTTGAAACAATAGCTGTTTATGAAATTGATAGATTTTATAAATAAGTAAACTTGGTTTATTTATCAGGTTTACTTTTCTTGCTGCATCATGTTTGTAaagttttagtaatttaaaataaatttgtacttttttatcTTTTCAATGAAAGAAAGTAAACATCTGTGATATATTTATG
>TCONS_00046273
GATAGACCTGTTCCGAGTGGCTTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACATCACTAGTTTACTATGGTGTCAGCTTGAATGTGGGGAACTTCGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATGGCAGAGTTTCCTGCACGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGACGGAGAATTTGCCAGAGTGTCTTTCTGCTACTTGGAGGCACAGCCTGCCTGATTATTCCTGCTATTCCAGCGAAATATCCTATAATTGTGACTGTAACCGCAGTGTTTGGGAAGTTTTCAATTTCTGCGGCCTTCTCCATTGTATACGTGTACACCGCTGAGCTCTACCCAACAGTTGTGAGGCAGAATGGGGTGGGCCTGAACTCCATGTGTGCCCGTGTGGCTGGTATTCTGGCTCCTCTGATTGGCTTGTTGGACGTTTATCATCATGCCATTCCTATGATCATATACGGCTCGCTGCCTTTTGTTGGAGGAGCTCTGACCTTCCTGCTTCCAGAAACACTGAACACTGACCTGCAGGACCACACAGATATCCCTGCGGATGAGAGCATGGGATTAAATAAAGCCAGCATTGAAAAAGGACTGAATAAGGAGCAAGGACTGGTTCTCAAGAGCACAAAATTTTGAGATTTGTACTGCTGTTTGAAACAATAGCTGTTTATGAAATTGATAGATTTTATAAATAAGTAAACTTGGTTTATTTATCAGGTTTACTTTTCTTGCTGCATCATGTTTGTAaagttttagtaatttaaaataaatttgtacttttttatcTTTTCAATGAAAGAAAGTAAACATCTGTGAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046272 False 1667 transcribed_unprocessed_pseudogene 0.44 10 20032331 20054257
TCONS_00046273 True 851 processed_transcript 0.43 5 20032340 20039150

Neighbor

gene id symbol gene type direction distance location
XLOC_023396 slc22a13b coding downstream 15514 20006711 ~ 20016817 (-)
XLOC_023395 NA coding downstream 69449 19958916 ~ 19962882 (-)
XLOC_023394 csrnp1b coding downstream 313091 19707609 ~ 19719240 (-)
XLOC_023393 CR384092.1 coding downstream 743563 19288654 ~ 19288768 (-)
XLOC_023392 cpa6 coding downstream 1112682 18880254 ~ 18919649 (-)
XLOC_023398 NA coding upstream 6434 20060691 ~ 20063050 (-)
XLOC_023399 oxsr1b coding upstream 9831 20064088 ~ 20152965 (-)
XLOC_023400 NA coding upstream 127740 20181997 ~ 20185025 (-)
XLOC_023401 BX247944.1 coding upstream 133059 20187316 ~ 20187430 (-)
XLOC_023402 myd88 coding upstream 134657 20188914 ~ 20192996 (-)
XLOC_023665 dre-mir-735 misc upstream 18123704 38177961 ~ 38178027 (-)
XLOC_023390 CR376786.1 non-coding downstream 1406964 18625252 ~ 18625367 (-)
XLOC_023384 NA non-coding downstream 2010117 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 non-coding downstream 2485462 17546753 ~ 17546869 (-)
XLOC_023407 NA non-coding upstream 395770 20450027 ~ 20531813 (-)
XLOC_023437 AL627129.1 non-coding upstream 1908795 21963052 ~ 21963168 (-)

Expression


Co-expression Network