XLOC_002340 (mmp30)


Basic Information

Item Value
gene id XLOC_002340
gene name mmp30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38643304 ~ 38663746 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004445
TGACAAGTTCAGACAGAAATCAAAACCCCCCGAAGCCACAAACTTCCACCCCCGTAGATCCCCAATGCTGATTGGAAATGATAAGACGCAGGGCAAGCCCATTTTAGACTATCTACATCTATAAAAGACTAAAGAACAAATGCCTGGAGTCACTTTTTCATTCCCTGCAGAGGACTGAAAATGGCGCATTGGCCAGCAGCTCTCATCCTTGTGGTGTCTTTGACACTCTGTAATGGCGCCCCCACAACAACACCATCAACAGAAGACCGTGAAATAGCAGAGGCGTATTTGTCGCAGTTCTACAGGGACTCTAAAGCAGCTAAAACCCTCGGCAGAATGTTTGTTTCAAATCTGGAAAATGAACTGAAGGCCATGCAGTCGTTTTTTGGACTGGAGGTCACAGGTCAGCTGGACTCAAACACTCTGACGACGATGAAGCTGCCTCGCTGTGGAGTCACCGATGTGGCCAGATTTGGACACTTCGAGGGGAAGCCCAGGTGGAAGCAGAGCGTTGTAACTTACAGGATAACTGAATATTCAACACAGCTGAGTCAGAGAGAGGTGGACTCCACTATCGCTAAAGCCTTCCAGCTATACAGTGACGTCATTCCTGTAGATTTCAAGCAGATCTTCAGTGGCACGGCAGATATCATGATACTCTTCAAAGGGGGACATCATGGAGATTTTTACCCCTTTGATGGGCCGAATGGTGTTCTAGCTCATGCAAACTCCCCCGGCCCAGAGCAGGGAGGAGACACACACTTTGATGATGATGAAAAATGGAGCTTAAGTTCACACAaCATAAACCTGCTTTTGGTGGCGGCTCATGAATTCGGGCATGCACTGGGACTCGATCACTCCAGAGACTCTTCGGCTTTAATGTATCCAACTTACAGATATGTCAGTACAAACGCATATACTTTACCCCGAGATGACCGACTTGGGGTTCAGGCTTTGTACGGTGTTCGAGCATCAACAAATAAACCTGAACCTAAACCTGAACCAAAACCAAACCCACAACCTGCACCAAGCCCACCAGAACCATGCAAGCGTGACTTGATATTTGACGCAGCAACCAGAATCCGAGGGGAATTGTACTTTTTTAAAGATAGGTATTACTGGAAGAAGGGCTACTACAGTGGACTTACACTACTTGAAATAAAAACCACCTGGCCATCCATCGACTCTGTTGATGCTGCCTATGAGTTCCAGGACAAAGGCACAAATTTTCTCTTCAAAGGTCAGCAGTTCTGGGCAGTAAAAGGCAACACTATACTGTCTGGATACCCCAAACCCATATCCACATATGGCTTTCCATCAAGTGTGAATAAGATTGACGCAGCCGTACATGTGAAATCAACTGGTCGCACTTTGTTTTTTGTTGGGAGCAAATACTGGAGCTTCAATGACAGAATGGGTAAAATGGACAGAGGCTTTCCTAAATCCATCAGTGCTGATTTTCCTGGCATCGGCTCAAAGGTGGACGCGGCTTTTGAAAACTATGGTTATCTGTATTTCTCAGACGGTGCAAGGCAAACAGAGTATATCTTTGCCTCAAGACGAGTGAATCGTGTTTTATTGAACTACGGATGGCTGGATTGCTACTAAACTATAAAACAAAATGTAGACATCTTGTCATGTTTCAGTAATCCTGAGTATTTGTAATACtactttctacttttttttttaaacagagccTAAATGTGATACTAATTATAGTAGGAAAAGGTGAATGcatatttttttgcaaatgaaaTAATCATGTTATACAGTACTATGTACACAAAAGTGTTGTTTTCAATATACCCTTTTTACACCCtgttaataaaacttttaaaatactgtttcatttctaatttgttttcagtttttgaGAAACACtgtgggctgtgtgtgtgtgttgatcccagttgtaagagtaaataataacttgatttctagttgatcatttgtaaaagtggcagaaggtagatttttctaaaGAATCACccgttgaactgcatcccaatcattacaaatactgcagatgacctattggaacctacattgatcacagaaatcagtcaagtttggtggatggctacatcaacagcctgaggtatcaagacatttatgctgcccattgcattacaaaccacaggagattgcaaattctttagcaggatagcgctccttctcatacttcagcctccacatcaaagttcctgaaagcaaagaaggtcaaggtggccagcccagtcaccagatctgaacattgttgagcatgacttgggtaagatggaggaggcattgaagatgaatacaaagaatcttgatgaactctgggagtcctgcaagaacgctttcttagccgttccagatgactttattagttacttgagtcattgcagagatgtatggatgcagtcctccaagcttataaGAGTCATATCATTTCTTTTcctactgcagcatgactttatattctatactgtacattatgtctgttaagtgacaagtcttttgtctaagcaaagtcagagcttactgtcctagttaaataattaaaaaccaaaacatgattatattatattttggtaaaaataGCGTAATCTAGAgacttttgcctttcatataagctacttTTGATAGTTACTC

Function

symbol description
mmp30 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and extracellular region.

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-5765 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and extracellular region.

Ensembl:

ensembl_id ENSDARG00000045887

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004445 True 2637 mRNA 0.42 10 38643304 38663746

Neighbor

gene id symbol gene type direction distance location
XLOC_002339 mmp13a coding upstream 22790 38610741 ~ 38620514 (+)
XLOC_002338 mmp13a coding upstream 40743 38593645 ~ 38602561 (+)
XLOC_002337 LO018336.1 coding upstream 56644 38560032 ~ 38586660 (+)
XLOC_002336 BX000451.4 coding upstream 95099 38548089 ~ 38548205 (+)
XLOC_002335 acer3 coding upstream 98878 38526496 ~ 38544426 (+)
XLOC_002341 acat1 coding downstream 171 38663917 ~ 38698966 (+)
XLOC_002342 CU896636.1 coding downstream 19920 38683666 ~ 38683780 (+)
XLOC_002343 tmprss2 coding downstream 44353 38708099 ~ 38729185 (+)
XLOC_002344 CABZ01051877.1 coding downstream 85520 38749266 ~ 38760444 (+)
XLOC_002345 dscama coding downstream 111662 38775408 ~ 38974445 (+)
XLOC_002333 BX000451.1 non-coding upstream 154475 38488708 ~ 38488829 (+)
XLOC_002332 NA non-coding upstream 210095 38432338 ~ 38433209 (+)
XLOC_002330 NA non-coding upstream 608469 38025045 ~ 38034835 (+)
XLOC_002327 NA non-coding upstream 753743 37865419 ~ 37889561 (+)
XLOC_002346 NA non-coding downstream 420266 39084012 ~ 39087853 (+)
XLOC_002354 NA non-coding downstream 665556 39329302 ~ 39393816 (+)
XLOC_002356 CR854987.1 non-coding downstream 1097008 39760754 ~ 39760879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00019798_00024212 NA coding CI01000197 null 18889 ~ 24585 (+)