Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_023401 (BX247944.1)

Basic Information

Item	Value
gene id	XLOC_023401
gene name	BX247944.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	20187316 ~ 20187430 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046277
gtcggcagctagctctctgcaactctcacatggtcacccactgaagctaaacagggctgcGCCCTGTCAgtagctggatgggagaccaagtgggaaagctgggttgttgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116940

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00046277	True	115	rRNA	0.57	1	20187316	20187430

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023400	NA	coding	downstream	2291	20181997 ~ 20185025 (-)
XLOC_023399	oxsr1b	coding	downstream	34351	20064088 ~ 20152965 (-)
XLOC_023398	NA	coding	downstream	124266	20060691 ~ 20063050 (-)
XLOC_023397	CR381686.1	coding	downstream	133059	20032331 ~ 20054257 (-)
XLOC_023396	slc22a13b	coding	downstream	170499	20006711 ~ 20016817 (-)
XLOC_023402	myd88	coding	upstream	1484	20188914 ~ 20192996 (-)
XLOC_023403	cry-dash	coding	upstream	6592	20194022 ~ 20208474 (-)
XLOC_023404	map3k22	coding	upstream	26988	20214418 ~ 20321012 (-)
XLOC_023405	dlec1	coding	upstream	145549	20332979 ~ 20369760 (-)
XLOC_023406	vill	coding	upstream	231529	20418959 ~ 20444844 (-)
XLOC_023665	dre-mir-735	misc	upstream	17990531	38177961 ~ 38178027 (-)
XLOC_023395	NA	non-coding	downstream	224434	19958916 ~ 19962882 (-)
XLOC_023393	CR384092.1	non-coding	downstream	898548	19288654 ~ 19288768 (-)
XLOC_023407	NA	non-coding	upstream	262597	20450027 ~ 20531813 (-)
XLOC_023437	AL627129.1	non-coding	upstream	1775622	21963052 ~ 21963168 (-)
XLOC_023442	NA	non-coding	upstream	1866379	22053809 ~ 22066831 (-)
XLOC_023445	AL590147.1	non-coding	upstream	2121514	22308944 ~ 22309058 (-)
XLOC_023446	CT573489.1	non-coding	upstream	2184556	22371986 ~ 22372100 (-)

Expression

Co-expression Network