XLOC_023403 (cry-dash)


Basic Information

Item Value
gene id XLOC_023403
gene name cry-dash
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20194022 ~ 20208474 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046279
GAGCACGTGCGTGCGCGCGTCTTCATGTTTGGTAAGCCCACAAGCACGCGCCTGTTACTAAACGTGCTACTCAGTCGCTTTCCTGGTAAACTGACCGCTCTGCAGTGTTCACAGGCCGGTCTTCATGATGTCCGCTTCCCGTACAGTCATTTGTCTGCTGAGGAACGATCTGCGGCTGCATGATAACGAGGTGTTTCACTGGGCTCAGAGGAATGCAGAGCACATAATACCGCTGTACTGCTTCGACCCGCGCCATTACCAGGGCACATATCACTACAACTTCCCCAAAACTGGCCCCTTCCGGCTGCGCTTCCTCCTAGACAGTGTAAAAGACCTGAGGGCCTTGCTGAAGAAACACGGCAGTACACTGTTGGTCAGACAGGGAAAGCCGGAGGATGTTGTCTGTGAATTGATTAAGCAGCTGGGTTCAGTCTCTACTGTGGCGTTTCATGAAGAGGTGGCGTCAGAGGAGAAGAGTGTGGAGGAGAAGCTGAAAGAAATCTGCTGCCAAAACAAAGTCAGAGTTCAGACCTTCTGGGGATCCACACTTTACCACAGAGATGATCTGCCATTCAGTCACATTGGAGGGTTACCTGATGTTTACACACAGTTCAGAAAGGCAGTGGAGGCTCAGGGACGAGTGCGACCGGTGCTTTCCACTCCAGAACAGGTGAAATCCCCCCCTTCTGGACTGGAGGAGGGTCCCATTCCTACATTTGACAGCCTAGGACAGACAGAGCCATTGGACGACTGTCGTTCTGCCTTCCCGTGCCGTGGTGGAGAAACTGAGGCTCTTGCTAGACTGAAGCATTATTTCTGGGATACAAATGCAGTTGCAACTTATAAAGAGACCCGGAATGGAATGATTGGAGTGGACTTTTCCACAAAGTTTTCTCCTTGGCTCGCATTGGGCTGCATCTCACCCAGATACATTTATGAGCAGATTAAAAAGTACGAAGTCGAACGAACCGCCAACCAAAGCACCTACTGGGTGATATTTGAACTTCTGTGGAGAGATTACTTTAAGTTTGTGGCTTTGAAATACGGAAACCGAATCTTTTATATGAACGGTCTGCAAGACAAGCATGTGCCATGGAATACAGATATGAAGATGTTTGATGCATGGAAAGAGGGAAGAACTGGCGTGCCATTTGTAGATGCCAACATGAGAGAGCTCGCGCTCACTGGATTTATGTCCAACAGAGGACGTCAAAATGTGGCCAGCTTTCTGACCAAAGACCTGGGCTTGGACTGGAGACTTGGCGCCGAATGGTTTGAATACCTGCTGGTGGATCATGACGTCTGCAGCAACTATGGAAACTGGCTGTACAGCGCAGGAATAGGAAACGACCCAAGAGAAAACAGGAAGTTTAATATGATCAAACAAGGACTGGATTATGACAATAATGGCGACTATGTCCGTCAGTGGGTTCCTGAGCTTCGAGGTATTAAAGGTGGAGATGTTCACACACCATGGACCCTCAGCAACTCAGCGCTGTCACACGCACAGGTCTCACTCAACCAAACATACCCTTGTCCCATCATCACCGCACCCGAGTGGAGTCGACACGTCAATAACAAATCATCTGGCTCGTCATCATCTAAAGGAAGAAAGGGTTCATCTTACACAGCAAGACAACACAAAGACAGAGGCATTGACTTCTACTTCTCCAAGAACAAACATTTTTGAGGAGAAGATGAGGTGAAATTGCACTTTTACTCAAGTGACACTGCAGCATCTGCTCAGGCCACAGTTTACATTGCTGAATGAGGAAGAGGAAATCGAAAAACAGTGTGGTTTTATGTTGCTCTTTCTGAATCTGTTTTCATACACATACAGAAATGGCtacttgctttcttttttttgttcttaCAAAAACTGTTACTctatttttcatgtatttatttgtattgcattAAGTTCAGTATGACAGTTTTAGTGGTAGTATCCCTTAAGATGTCCTTGTTTAGTACAAAAGTAAGATCATTTATAATCATTTTTCATTATGCTCTACCTAAAAATAAAACCGTTGGGATTTTGTTGG

Function

symbol description
cry-dash Enables damaged DNA binding activity; deoxyribodipyrimidine photo-lyase activity; and flavin adenine dinucleotide binding activity. Acts upstream of or within photoreactive repair.

GO:

id name namespace
GO:0018298 protein-chromophore linkage biological_process
GO:0000719 photoreactive repair biological_process
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function
GO:0003913 DNA photolyase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040617-2 Enables damaged DNA binding activity; deoxyribodipyrimidine photo-lyase activity; and flavin adenine dinucleotide binding activity. Acts upstream of or within photoreactive repair.

Ensembl:

ensembl_id ENSDARG00000002396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046279 True 2045 mRNA 0.46 14 20194022 20208474

Neighbor

gene id symbol gene type direction distance location
XLOC_023402 myd88 coding downstream 1026 20188914 ~ 20192996 (-)
XLOC_023401 BX247944.1 coding downstream 6592 20187316 ~ 20187430 (-)
XLOC_023400 NA coding downstream 8997 20181997 ~ 20185025 (-)
XLOC_023399 oxsr1b coding downstream 41057 20064088 ~ 20152965 (-)
XLOC_023398 NA coding downstream 130972 20060691 ~ 20063050 (-)
XLOC_023404 map3k22 coding upstream 5944 20214418 ~ 20321012 (-)
XLOC_023405 dlec1 coding upstream 124505 20332979 ~ 20369760 (-)
XLOC_023406 vill coding upstream 210485 20418959 ~ 20444844 (-)
XLOC_023407 NA coding upstream 241553 20450027 ~ 20531813 (-)
XLOC_023408 zbtb47b coding upstream 380984 20589458 ~ 20641000 (-)
XLOC_023665 dre-mir-735 misc upstream 17969487 38177961 ~ 38178027 (-)
XLOC_023397 CR381686.1 non-coding downstream 139765 20032331 ~ 20054257 (-)
XLOC_023395 NA non-coding downstream 231140 19958916 ~ 19962882 (-)
XLOC_023437 AL627129.1 non-coding upstream 1754578 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1845335 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 2100470 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 2163512 22371986 ~ 22372100 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_03802116_03809432 CRY-DASH coding CI01000018 null 3801686 ~ 3809432 (-)
bowfin (Amia calva) AMCG00019136 NA coding CM030124.1 CM030124.1 5269238 ~ 5278716 (-)