XLOC_023407


Basic Information

Item Value
gene id XLOC_023407
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20450027 ~ 20531813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047175
catttggtgtgtgtgtgttttttttctctgtcaCAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCCATCAGCAATGCAGACTTTATAGTCCCTGTGGAGATCGACGGAACAGTTCATCAGGTGTATGTGCTGAAAAGGCCTCATGTGGACGAGTTTCTGCAGAAAATGGGCGAAATGTTTGAATGTGTTCTTTTTACAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAGCACACGGGCTCAACACTGCCTCCAAAACACCACcctccatccatcatccatccatccgtccgtccgttcaGTTCTGGCCTTCAGAGGATGCCATTCATCCAACCAACTACTCCAGATCCTCAATGGACCAAGGGCCTACAATAATCCTTGGCAAGCAAATACACATCTGAGTTCACCTTTTGACGCACAatgaaaataagtaaaacaaagcgtcattttttttttttttttaagaaacacgAGTTTAATATTCTTGAATATAAAAAAGATCAACAAGACATGCTATTTTTCTGGACCGGCGTGTAAACACTTTCaactttttgtttttcagttcaGGCTATGCAGGCAGTCTTCATCAGTAGTTCCAACAactgtgatttgtttttgtttttttatttcgttttgttCTCTTGTACCAAACAAAGTGCCTTCTGACTGTTGTTTTTATGAGGACATGTTTTTTGTATGCTGCATATTTACAGTTCGAAACCTTTAAACCAACCCTTACTGTAAGACCAAGGTAAACGGTGAGTcttttgatggaaaaaaaaacgCAGACTTTTCACTGGACTGGAGAGAAGCAGATGCGCTTGTTTTCTTGGGTTCTTTTAATGCCTTTGAAAATATAGCAagtattgtgttcaaaagaagcGTTTGCATCTATTAGCCAACTGTGATCTGAACTAATAACGCtacatatattgtaaaaaaaaaacaatccaataCGTCAGGATCTGAAATTATTAATCATCGTGGAAATAAAAGATGCAATCAGTA
>TCONS_00046286
AATGCATGTATGGTGCGTCTGCCATCTGGACTCACACGCTAGCTCGCTAGCATCAGGCTAGCCgaaaattatcaaaacataaGTGACCGAGGAGGAATAAAATCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAAGAGATCCTTTCTTCTTGCCAAGAAAAAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAGCACACGGGCTCAACACTGCCTCCAAAACACCACcctccatccatcatccatccatccgtccgtccgttcaGTTCTGGCCTTCAGAGGATGCCATTCATCCAACCAACTACTCCAGATCCTCAATGGACCAAGGGCCTACAATAATCCTTGGCAAGCAAATACACATCTGAGTTCACCTTTTGACGCACAatgaaaataagtaaaacaaagcgtcattttttttttttttttaagaaacacgAGTTTAATATTCTTGAATATAAAAAAGATCAACAAGACATGCTATTTTTCTGGACCGGCGTGTAAACACTTTCaactttttgtttttcagttcaGGCTATGCAGGCAGTCTTCATCAGTAGTTCCAACAactgtgatttgtttttgtttttttatttcgttttgttCTCTTGTACCAAACAAAGTGCCTTCTGACTGTTGTTTTTATGAGGACATGTTTTTTGTATGCTGCATATTTACAGTTCGAAACCTTTAAACCAACCCTTACTGTAAGACCAAGGTAAACGGTGAGTcttttgatggaaaaaaaaacgCAGACTTTTCACTGGACTGGAGAGAAGCAGATGCGCTTGTTTTCTTGGGTTCTTTTAATGCCTTTGAAAATATAGCAagtattgtgttcaaaagaagcGTTTGCATCTATTAGCCAACTGTGATCTGAACTAATAACGCtacatatattgtaaaaaaaaaacaatccaataCGTCAGGATCTGAAATTATTAATCATCGTGGAAATAAAAGATGCAATCAGTA
>TCONS_00046287
acacacacacacacacacatacggggAGAGAAAAGAGCGGCTGCAGATCAGACTCTTTGTTATTACACACTGTCACTGATCTCCATAGACCTCACAGGACATGAAGGCTGAACTGTTGCTAGTTTCTGCGGTCTGACAGGAGGATCTGCTGTTTGTgcggtgtgtgtgcgtgtgtgcgtgcgtgtgtgtgtttatttggatGCGGTGCTGGAGGATCGTGTGCGGTGAATGCATGTATGGTGCGTCTGCCATCTGGACTCACACGCTAGCTCGCTAGCATCAGGCTAGCCgaaaattatcaaaacataaGTGACCGAGGAGGAATAAAATCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAAGAGATCCTTTCTTCTTGCCAAGAAAAAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCCATCAGCAATGCAGACTTTATAGTCCCTGTGGAGATCGACGGAACAGTTCATCAGGTGTATGTGCTGAAAAGGCCTCATGTGGACGAGTTTCTGCAGAAAATGGGCGAAATGTTTGAATGTGTTCTTTTTACAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAGCACACGGGCTCAACACTGCCTCCAAAACACCACcctccatccatcatccatccatccgtccgtccgttcaGTTCTGGCCTTCAGAGGATGCCATTCATCCAACCAACTACTCCAGATCCTCAATGGACCAAGGGCCTACAATAATCCTTGGCAAGCAAATACACATCTGAGTTCACCTTTTGACGCACAatgaaaataagtaaaacaaagcgtcattttttttttttttttaagaaacacgAGTTTAATATTCTTGAATATAAAAAAGATCAACAAGACATGCTATTTTTCTGGACCGGCGTGTAAACACTTTCaactttttgtttttcagttcaGGCTATGCAGGCAGTCTTCATCAGTAGTTCCAACAactgtgatttgtttttgtttttttatttcgttttgttCTCTTGTACCAAACAAAGTGCCTTCTGACTGTTGTTTTTATGAGGACATGTTTTTTGTATGCTGCATATTTACAGTTCGAAACCTTTAAACCAACCCTTACTGTAAGACCAAGGTAAACGGTGAGTcttttgatggaaaaaaaaacgCAGACTTTTCACTGGACTGGAGAGAAGCAGATGCGCTTGTTTTCTTGGGTTCTTTTAATGCCTTTGAAAATATAGCAagtattgtgttcaaaagaagcGTTTGCATCTATTAGCCAACTGTGATCTGAACTAATAACGCtacatatattgtaaaaaaaaaacaatccaataCGTCAGGATCTGAAATTATTAATCATCGTGGAAATAAAAGATGCAATCAGTA
>TCONS_00046288
gggttgcagctactAAACAACTAAGAAGATCAGAAGAGGTTTGTTCTCTGACTGGATTCAGAAGTGATTGGTTTTCTGTTGTAActgttgtttgtttggtttgtttgagGATGTACACTGTATGTGCTGAAAAGGCCTCATGTGGATGAgcttctgtttgtttttctgtcagtaattgtttgtttggtttgtttgaaGGTGTATGTGCTGAAAAGGCCTCATGTGGACGAGTTTCTGCAGAAAATGGGCGAAATGTTTGAATGTGTTCTTTTTACAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAGCACACGGGCTCAACACTGCCTCCAAAACACCACcctccatccatcatccatccatccgtccgtccgttcaGTTCTGGCCTTCAGAGGATGCCATTCATCCAACCAACTACTCCAGATCCTCAATGGACCAAGGGCCTACAATAATCCTTGGCAAGCAAATACACATCTGAGTTCACCTTTTGACGCACA
>TCONS_00046289
ATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAAGAGATCCTTTCTTCTTGCCAAGAAAAAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGTGTGATCAGGTCCAGGTCATTCCTATTCCCAGTCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCCATCAGCAATGCAGACTTTATAGTCCCTGTGGAGATCGACGGAACAGTTCATCAGGTGTATGTGCTGAAAAGGCCTCATGTGGACGAGTTTCTGCAGAAAATGGGCGAAATGTTTGAATGTGTTCTTTTTACAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAG
>TCONS_00046290
CATctgaattaaacattttaacacagGTGATTTGTAGAGGTGTGGAGGGTTTTATGATAAAGACATTTAATCTATGCCTTTATTTACACATAACACATACTGTTAAACAGCAGCCTGTATTTAAGGGCTGTAAATGGGTCAGTGTGGTCATCATGGTGTAATTGCTGCATTGTATTGTTACAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGT
>TCONS_00046291
catttggtgtgtgtgtgttttttttctctgtcaCAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCCATCAGCAATGCAGACTTTATAGTCCCTGTGGAGATCGACGGAACAGTTCATCAGGTGTATGTGCTGAAAA
>TCONS_00046292
CTAAGCTGATACTGAGTCAGTGTGTGGCTGCAACCTGGTTCAAGTAATCCAGGATAGGCTTTGTGGACTAGGGTTGGCCTGTTCTTGGTTACttgcactgggttgcagctactAAACAACTAAGAAGATCAGAAGAG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006338 chromatin remodeling biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0016043 cellular component organization biological_process
GO:0071565 nBAF complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016514 SWI/SNF complex cellular_component
GO:0070603 SWI/SNF superfamily-type complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:1904949 ATPase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-060825-333 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSPL (CTD small phosphatase like).

Ensembl:

ensembl_id ENSDARG00000071673 ENSDARG00000081224

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047175 False 1535 lncRNA 0.44 6 20450027 20501301
TCONS_00046286 False 1551 processed_transcript 0.44 6 20450027 20531586
TCONS_00046287 False 1914 mRNA 0.45 7 20450027 20531813
TCONS_00046288 False 792 lncRNA 0.49 3 20450615 20470991
TCONS_00046289 False 831 mRNA 0.51 8 20450804 20531474
TCONS_00046290 False 461 lncRNA 0.48 2 20450838 20469290
TCONS_00046291 False 369 lncRNA 0.48 4 20470778 20501301
TCONS_00046292 True 137 miRNA 0.47 1 20470954 20471090

Neighbor

gene id symbol gene type direction distance location
XLOC_023406 vill coding downstream 5183 20418959 ~ 20444844 (-)
XLOC_023405 dlec1 coding downstream 80267 20332979 ~ 20369760 (-)
XLOC_023404 map3k22 coding downstream 129015 20214418 ~ 20321012 (-)
XLOC_023403 cry-dash coding downstream 241553 20194022 ~ 20208474 (-)
XLOC_023402 myd88 coding downstream 257031 20188914 ~ 20192996 (-)
XLOC_023408 zbtb47b coding upstream 57645 20589458 ~ 20641000 (-)
XLOC_023409 nktr coding upstream 111845 20643658 ~ 20658668 (-)
XLOC_023410 vipr1b coding upstream 176361 20708174 ~ 20808283 (-)
XLOC_023411 si:ch211-161h7.4 coding upstream 360969 20892782 ~ 20908395 (-)
XLOC_023412 si:ch211-161h7.5 coding upstream 378109 20909922 ~ 20915050 (-)
XLOC_023665 dre-mir-735 misc upstream 17646148 38177961 ~ 38178027 (-)
XLOC_023401 BX247944.1 non-coding downstream 262597 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 265002 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 386977 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 395770 20032331 ~ 20054257 (-)
XLOC_023395 NA non-coding downstream 487145 19958916 ~ 19962882 (-)
XLOC_023437 AL627129.1 non-coding upstream 1431239 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1521996 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1777131 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1840173 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 2347128 22878941 ~ 23218030 (-)

Expression


Co-expression Network