XLOC_023408 (zbtb47b)


Basic Information

Item Value
gene id XLOC_023408
gene name zbtb47b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20589458 ~ 20641000 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046293
ATGAACGTCACTCACAACCGCATGCAGATCTGCAACAAATGTGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTGCATCATCAGACTAACTGTGAGAAAAACATACAGTGCGTGACTTGTGGaaaagcttttaaaaagctgtggtCTTTACACGAACACAACAAGATTGTCCATGGATACGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAGTTTTACACCATGGCACATGTCCGGAAACACATGGTTGCTCACACTAAGGACATGCCGTTTACCTGTGAGACATGTGGGAAGTCCTTCAAACGCAGCATGTCTCTTAAAGTGCACTCGCTTCAGCACTCTGGAGAAAAGCCCTTCAAGTGTGAGAACTGCAGTGAACGATTCCAGTACAAATACCAGCTGAGGTCACATATGAGCATCCATATCGGACATAAGCAGTTCATGTGCCAGTGGTGTGGGAAAGACTTCAACATGAAGCAGTACTTtgatgaacacatgaagacaCACACTGgagagaaaccatacatCTGTGAGAtctgtggaaagagtttcacgaGCCGGCCCAATATGAAACGTCACCGCCGCACACACACTGGCGAGAAGCCGTACCCCTGTGACGTGTGTGGACAGCGTTTCCGCTTCTCCAACATGCTCAAAGCCCACAAGGAGAAGTGTTTCCAGGTTAGCAACCCCATGGCATCTGATACCACCACCAATCTGCTGGGCTTTGACCCCGCGTCGattccCAGCCACCCCGTGACTCCTCCCACCGAGGCTTCCAGTCTTCACCAGGTCAAGCCGCTCTCACTTCCTTTCATTCACTCAATCGTAGGTCTTTCCTCTCCTCCGGCCCTGTTTTCCACTGAAAAGGTTAACACCGGTAATAACTAG
>TCONS_00046294
GAGGGTCTGGGTCAGAAGGTGAAGCTTGAAGAAAAGCAGCACTTTTCTTGCAAAAAGTGCCCTCGTGTTTTTAACAACCGCTGGTATTTGGAGAAGCACATGAACGTCACTCACAACCGCATGCAGATCTGCAACAAATGTGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTGCATCATCAGACTAACTGTGAGAAAAACATACAGTGCGTGACTTGTGGaaaagcttttaaaaagctgtggtCTTTACACGAACACAACAAGATTGTCCATGGATACGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAGTTTTACACCATGGCACATGTCCGGAAACACATGGTTGCTCACACTAAGGACATGCCGTTTACCTGTGAGACATGTGGGAAGTCCTTCAAACGCAGCATGTCTCTTAAAGTGCACTCGCTTCAGCACTCTGGAGAAAAGCCCTTCAAGTGTGAGAACTGCAGTGAACGATTCCAGTACAAATACCAGCTGAGGTCACATATGAGCATCCATATCGGACATAAGCAGTTCATGTGCCAGTGGTGTGGGAAAGACTTCAACATGAAGCAGTACTTtgatgaacacatgaagacaCACACTGgagagaaaccatacatCTGTGAGAtctgtggaaagagtttcacgaGCCGGCCCAATATGAAACGTCACCGCCGCACACACACTGGCGAGAAGCCGTACCCCTGTGACGTGTGTGGACAGCGTTTCCGCTTCTCCAACATGCTCAAAGCCCACAAGGAGAAGTGTTTCCAGGTTAGCAACCCCATGGC
>TCONS_00046295
ATAAGGGCACTTGGTATTGATTGCACATTTTAGAGCTCAGACAGAAAAAAGAATATCCAGTGCAATGGCCCTTTAAAACTTCTGACAAAAGCCCATATGATCCCTGAGCTCCAATCACCAATTCCTACTGCAAAAGCAGCCTCTGCATTTTTGTCTGTCTGAATGCTGCTAGCACGgcggaaaaaaaaacagtgaggGGAAGGAAAACTGAAGAAATGTTAAAATCCAGCGCACTGTTACATGGCGAGCGGAAGTCCTGCGCTAATGGAGTTATTCGCGGACTCCTTCGACGCTAGAGAGCTCGGATCAAAATGTCGACACCGATGAGGACTTTGCTGGACGTACAAAAGCTGTGCAGTAAACTCTCTCTGTCCTCTCCTGCTTTGGAACCAATGGAAAGTGGAGGGGACTGCTGAGTTCTTTCTGCTGGAGGATGCAGCGCTGCTCTTTCCTCATTTAATGGCCAGGCTGAACAGACGTCATCTCAACCAGCCTCACCTGTGCCTCGTGGACCTCCTGCTGGATGTGCTGAGTGACCATAACCCCTACATCCTAACCCTCGCATCCCAGAGCCAACCACTGCACCACATAAACCTGAGCATCCAGATCTTCATCTACATCTCCATCTTTGATTTGGTTATTTTTCTTCAGATGAGCGATCAATCAAGCTCAAGCTACAGTGAGATGGCTAATGTCGAAGGGCAGAGCGATGGCTCATCCAATCAGATTTACAAGATAAAGGAGCTTGAGAAGATGTTCGTGCAGCAAGGAAACGGTACTTTCCCATCACTCGTAGAGGATAATAGTGAAGTTACCCAAATGCATTCATCCAACCCTCAAACCAAACACTTCTACAAGATAGAAGAGAGTGAAGGGGGAGTGGCTAGTTCAGGAGGGCGTGGTTTGTGTACAATGGAGGGTGGGGCCAATCCTAATAAAGCAGAATCACTGGATAGTTcatttaacagagagcagattatTGTGGAGGTCAATCTCAACAACCAGACTTTGAATGTTTCCAAAGGGTCTGACGGTAAAGGTGTGTCATCCCTGCTCATTCACCAACATGTCAGTCTTCCTGTCACGGAGGAACATAGGGAACGGGATGAAAATGAAGATGTTGGTGAGGATGAAGAAGAGGAGTATGAACACAGAAATGAAGAGATGGAAAACTGcagtgatgatgaagatgatgaggatgaggatgaagAAGAGAACAACCTTGACATTCCAGATTCAGGACGCAGCAGCCAGGAAAGACTACGTGCCCCAAGAATAACTACAAACACCGCTATGAGACAAACGTTAATCGATGCCACATTAGAAGAAGGCAGGAAGAGAAGGAAAGAGCAGGAGGGTCTGGGTCAGAAGGTGAAGCTTGAAGAAAAGCAGCACTTTTCTTGCAAAAAGTGCCCTCGTGTTTTTAACAACCGCTGGTATTTGGAGAAGCACATGAACGTCACTCACAACCGCATGCAGATCTGCAACAAATGTGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTGCATCATCAGACTAACTGTGAGAAAAACATACAGTGCGTGACTTGTGGaaaagcttttaaaaagctgtggtCTTTACACGAACACAACAAGATTGTCCATGGATACGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAGTTTTACACCATGGCACATGTCCGGAAACACATGGTTGCTCACACTAAGGACATGCCGTTTACCTGTGAGACATGTGGGAAGTCCTTCAAACGCAGCATGTCTCTTAAAGTGCACTCGCTTCAGCACTCTGGAGAAAAGCCCTTCAAGTGTGAGAACTGCAGTGAACGATTCCAGTACAAATACCAGCTGAGGTCACATATGAGCATCCATATCGGACATAAGCAGTTCATGTGCCAGTGGTGTGGGAAAGACTTCAACATGAAGCAGTACTTtgatgaacacatgaagacaCACACTGGTAATAACCACTACGTCTATATCTTtaaagaacaaataataatattttaaacaacaatatagTATGTAATAT

Function

symbol description
zbtb47b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB47 (zinc finger and BTB domain containing 47).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-34 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB47 (zinc finger and BTB domain containing 47).

Ensembl:

ensembl_id ENSDARG00000079547

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046293 False 900 mRNA 0.49 6 20589458 20599781
TCONS_00046294 False 806 mRNA 0.47 5 20589678 20599880
TCONS_00046295 True 2044 mRNA 0.45 6 20591660 20641000

Neighbor

gene id symbol gene type direction distance location
XLOC_023407 NA coding downstream 57645 20450027 ~ 20531813 (-)
XLOC_023406 vill coding downstream 144614 20418959 ~ 20444844 (-)
XLOC_023405 dlec1 coding downstream 219698 20332979 ~ 20369760 (-)
XLOC_023404 map3k22 coding downstream 268446 20214418 ~ 20321012 (-)
XLOC_023403 cry-dash coding downstream 380984 20194022 ~ 20208474 (-)
XLOC_023409 nktr coding upstream 2658 20643658 ~ 20658668 (-)
XLOC_023410 vipr1b coding upstream 67174 20708174 ~ 20808283 (-)
XLOC_023411 si:ch211-161h7.4 coding upstream 251782 20892782 ~ 20908395 (-)
XLOC_023412 si:ch211-161h7.5 coding upstream 268922 20909922 ~ 20915050 (-)
XLOC_023413 CR450812.1 coding upstream 275128 20916128 ~ 20952672 (-)
XLOC_023665 dre-mir-735 misc upstream 17536961 38177961 ~ 38178027 (-)
XLOC_023401 BX247944.1 non-coding downstream 402028 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 404433 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 526408 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 535201 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 1322052 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1412809 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1667944 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1730986 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 2237941 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04041639_04049792 NA coding CI01000018 null 4040830 ~ 4049792 (-)
bowfin (Amia calva) AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding CM030124.1 CM030124.1 5582228 ~ 5588342 (-)