XLOC_023409 (nktr)


Basic Information

Item Value
gene id XLOC_023409
gene name nktr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20643658 ~ 20658668 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046296
AGATCTGGCAACATGAAAAAACCTCAATTGATCAGTCGACAGAGCGGGTTTAGCTTTTTTGGAGCTTTTTGACTTTTAACTAGCTGTTAAGGAAGCCCACTCTGTGGAAAAAATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCATAACTACAAAGACAGCGCCTCACCTAGATGGAGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACGTTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAGTCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAagctgaacagaatgtgaaaagGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAATTGATGTACAGGACACAGACATTGTACCAAATGACACCAAACCAGCTGTCACAAAATCTGGACGCAAGATCAAAGGCCGCGGAACTATGAGATACCATACACCCCCTCGGTCAAAGTCCCGTTCAGAGTCAGAATGTGAACGGGGGAGCAGTGAGACTCCCCCACACTGGAAAGAGGAAATGCAGAGGACCAAGGCTTACCAGCCCCCCAGTGTGGAGAGATGGAGTAAAGAAGAAAGATGGGATGACAGAAGTGACACCCCAAGGTCCAGGTCAGAATCCAGAGAACATTCCTTGGGTGAGGCCTCTGTGTACTCAAGCCAACATagatctaaaaaagaaaaaaagaaagccaAACAAAAGAAGAAATCTAAGAAACGGAAGCAtgctaaaaaacataaaaagaccAAGACCAAGGAAACATCTCTGACGGATGGTGAGGTGTCTGTGTCCTCAGGTAAGAGGACAAAACACTCAAGCCGTGCTGAAAGGAGACGTTCTCGTTCTTATTCTCGCTCATCCTCACGTCACTCACATAGATCGTATAAATCGGAGTCAGAAAGGAGACATTACTTATCGAGCTCTTCTAGAGATTCACGGTCTTATTCGAGATCTAGGAGCAGATCATATTCTAGAAGTGACTCAAGGTCAGAGAGGCGGGCTCGATCATCCAAGAGGTCAAGTCGAAGCCGATCAGGGAGGTCTGTTACACATTCTAGGTCACGGTCTCGTTCTAGATACAGGACAAGGTCAAGAACCAGATCAAACTCTAGGTATAGTTCAGAAACCCCAACACGTTCCAAGAAAAGAAATGAATTGAGATCCCCTCGAAAGTCCAAGCCTACAGAGGGTGGTATTTCCAGATTAGATAAGTCTGTCCCTAAATCGATTAAAGGTGAAGAAGCTAAAGTTCAACCTTCAGCGTCTTCAGAGAGTGTCTCTGCATTGCCTATGAGTGACAGTCCACCACCTTCTCGATGGAAACCAGGCCTGAAACCCTGGAAACCTTCTTATGTCCGTATCCCAGACACTGATGTAAAATCAGCTCTGGCTTCCAATGCACTAACAAGCTCATCGTCAAATGCACCTCTGGAGACAATGTCCTCTTTAAAGCAAGATATAGCTGTTAGTCAAAGGGATCCAAGCAGTGGTAACAGTAACATTCCTGATAGGCTCTTGGAAAGAAGTTTATCCAGGAGCAGGTCTTGTAGTCAATCAGGAAGCTGCAGCAAATCACCAACTCATTATGGCAATAGATCGTCCTCCTGCAGTAGGTCAGAATCTTATAGTTCATACAAAGAAAGATCCACTGTGAAGAAGAGAAAACATTTCAGTTCTCATAGAAATGCTCAAAAGAGAGACAACCATGCAAATCGTCATGATGGTGGCCACAAAGATACATCTCCCTCCTCAGAGGATGTATCAGATAATCCATACAGCCCATTACACGTGCAAAGTGACATCTTGGTACAGAAAAACACGCTTGATTCTCTTTCAGCCCTACGGGCATTGGCATTAAAAAGCAAGAACCTCAATCGAAGGAAAGAACCATTAATGGACAAGAAAAGTGCATCTGGTTGGGAAAGTGATGAGGAGAATGCAAGTAAGACTAATACTGCCAAAGTACACAATCAGCACCTTGTTAAAGATGAAGAActtaatgaaatgaaaaaaaggcAGATTTTGTCTCGTTGTTGGGAGTCTGAGAGtgacacagaaataccagataaAACTGCTGTTGGTGAGGCTAAATATTTGTCTGAGAAAGAGGAGGGAGAGGCTAGTACAGAATCAGAATATGAATACCCTTTATGGCCAAACCTAGGTGCTGAAATGTCTAAGGAGTTAAAAGCTAATGACGAGCACTCTGCAGACACAAAACCTTCAAAGCACAAGAACAAAAAAGCCAAACGGAAGCACAAACACAAGAGGAAGAATTCTTCAAGGTCAGCATCTCGTAAATCCAAGGCCAAGAAATCCAAGAAACATCAGAAGCCAAAAGAGACATTTCATTGGCAGCCTCCTCTAGAGTTTGGGGACGAAGGTGAGGAGGACGATTCAGTCACTCAAACCAAGCAATTACACAAAGCAAGTACTGATGCCATCAATGATGGAACAAAACGTAATTTAAAGGCTGAACAGATCAAGCAAAAAGTCTCAGAGAATACAGATCAGGATCAAAAGATTGTTGAATCACAGCAAGATAAGTTGTCAATAGAGTCTTCTAAAGTTATTGATGAGAATGAGAAGATGCCtaaaatccaaaaatcaaagttACACAACAATACCAAAAGAGATCTTGCTCAAAGCCACCCAGAAACCCTTTCCAATCTTTCAGACACTAACTTGGCAAGTAACAAACCATCAGACCTGAATAAAGTTGAGCCACATTCTCCAGAGTGCATACCAGAAGCTCAGCAACTTGGGCCCAAAGCAACTGGCTTTTCCCCACTGAAAAATATTCTAAATAACGACAACGTGCTTGTTCCATCTCAGAAAGATAAAGTCAGCTCCATTACTACTGGATCAGCTTTACCACAAGACAGTAAACAAGAGGAAACTATACCTGGTGACAGTTGTGTCTCAGTGGTTGAAAATAAATGGAAACCTTTGACAGGGATGACGGCTGTGCAAACCATTACGAGAAAGCCTTTcattatgaaaataaacaaacagcaagATCAACTTGTAGGAAAGAGCCAGGGTGTCAAGATTGAGATCAAGAGCAAGAGTAAAGTTCGTCCAGGATCCCTTTTTGATGAGGTACGAAAGACTGCTCGGTTAAATCAAAGACCCAGAAATCAAGACAGCTCAAGTGAAGAAGACTCCCTTCCAGCTGCAGGAGAAAAGCCTGAAGCCCATAATCACTCAAGGAGCAAGTCAAAGTCTGTGTCTAGTCATAGGTCCCACCGCAGAAGTAGGTCCCATTCATATAGCCACCCCAGGAGCAGGTCCAGAAGCTACACCTACTCTTCCAGgagCTACAGTAGAAGTAGAAGCAGAAGTAGATACAGTAAAGGACACTCTCGTTCTCGAAGTAGCACCTACCGAAGTTACCGTAGCCGCACACACAGTAGGAGTTGCTCTAGGGGTCGGTATAGAGGTCGTTACAGATCAAGGTCAGACTCTTACGATAGTTATTCTAGCCACAGCCGCAGTCGTAGCAGAAGAAGAGGGCATCGGAGAAGCAAAAGCTCTGATCGCAGGTCCAGGTCATATCGCTCCTACAGTCGCAGTTCCTCTAGGCGGCGAAGTCATAGTCGAAGCAGTCGATACAGCTGAGTTTAAGGCATAATGATTGGATCAATAGTTTAATTTTTGTATGGTAATTTACATACTTTCTTGTACACTGACattatgctgtattttttttttttacattttatgaatgaatgtacatttgaaaaaaacTTAGTCACCACTTTTTATTCTGACACTTTTTCTGTATTCCTAGCAAAGGGAGCATAGAAACCATCCAACTGTATAGCCAAGGTTATATATAAACAGCTACTTACCTCTTACTTATCTTTGAAACATGAGAGtttgtaaaatgtatttcatGTTTGGAAGGATTGTAACACGCAGCTCTGTTGGTTAACATCAATGGAAAAAGTTTTGATTGGACTAAatgaatgttttatgtttaatagattgacttgtttttttattatttttatttgtacataAAATACTCTGAATGTATCTAATGCTGCTTATTGATATACTGTTGAATTATAACAGACACACCTTGccaactgtaaataaaacaatatttgtttgtGAAATGCT
>TCONS_00046297
ATATCTTGTGTTTTAAGCTAGATCTTCTTTTTAATTAGAGTTTGAACCAATGCCTGTATAAAATAGGTTTGACCCTATTTTAAGGCCTATTTACACAATACATAGGAGGATAAATGGCAATGTTATCATAAATGAGAAGCCCACTCTGTGGAAAAAATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGAGATTGTGGTCTTTTGCAAAATGAAAAGATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCATAACTACAAAGACAGCGCCTCACCTAGATGGAGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACGTTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAGTCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAagctgaacagaatgtgaaaagGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAATTGATGTACAGGACACAGACATTGTACCAAATGACACCAAACCAGCTGTCACAAAATCTGGACGCAAGATCAAAGGCCGCGGAACTATGAGATACCATACACCCCCTCGGTCAAAGTCCCGTTCAGAGTCAGAATGTGAACGGGGGAGCAGTGAGACTCCCCCACACTGGAAAGAGGAAATGCAGAGGACCAAGGCTTACCAGCCCCCCAGTGTGGAGAGATGGAGTAAAGAAGAAAGATGGGATGACAGAAGTGACACCCCAAGGTCCAGGTCAGAATCCAGAGAACATTCCTTGGGTGAGGCCTCTGTGTACTCAAGCCAACATagatctaaaaaagaaaaaaagaaagccaAACAAA
>TCONS_00046298
ATGTGTTCTTTTGGGTTTCTTGCAGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCATGTAA
>TCONS_00046299
ATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGAGATTGTGGTCTTTTGCAAAATGAAAAGGTAA
>TCONS_00046300
ATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGGTAAGCCATCTTCAGATCGGGTTTGGTTTGAATCAAGCACTCTGTAA

Function

symbol description
nktr Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-1725 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor).

Ensembl:

ensembl_id ENSDARG00000059097

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046296 False 4810 mRNA 0.43 17 20643658 20658446
TCONS_00046297 False 1454 nonsense_mediated_decay 0.45 14 20647475 20658668
TCONS_00046298 False 270 mRNA 0.43 3 20651000 20652473
TCONS_00046299 False 318 mRNA 0.42 5 20651858 20656773
TCONS_00046300 True 333 mRNA 0.43 4 20652148 20656773

Neighbor

gene id symbol gene type direction distance location
XLOC_023408 zbtb47b coding downstream 2658 20589458 ~ 20641000 (-)
XLOC_023407 NA coding downstream 111845 20450027 ~ 20531813 (-)
XLOC_023406 vill coding downstream 198814 20418959 ~ 20444844 (-)
XLOC_023405 dlec1 coding downstream 273898 20332979 ~ 20369760 (-)
XLOC_023404 map3k22 coding downstream 322646 20214418 ~ 20321012 (-)
XLOC_023410 vipr1b coding upstream 49506 20708174 ~ 20808283 (-)
XLOC_023411 si:ch211-161h7.4 coding upstream 234114 20892782 ~ 20908395 (-)
XLOC_023412 si:ch211-161h7.5 coding upstream 251254 20909922 ~ 20915050 (-)
XLOC_023413 CR450812.1 coding upstream 257460 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding upstream 263876 20922544 ~ 20926812 (-)
XLOC_023665 dre-mir-735 misc upstream 17519293 38177961 ~ 38178027 (-)
XLOC_023401 BX247944.1 non-coding downstream 456228 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 458633 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 580608 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 589401 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 1304384 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1395141 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1650276 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1713318 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 2220273 22878941 ~ 23218030 (-)

Expression


Co-expression Network