XLOC_023418 (gramd1c)


Basic Information

Item Value
gene id XLOC_023418
gene name gramd1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21131874 ~ 21150169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046313
tctctctatctctctcactcacagacaaaagaaagaaaatagaaaCAAAGGGAGTCATACGTAAAATATGCAAATTGAAAGCGTGCTTGTCCTCGCTGCTTTatgagctggaggagtttgactgtaagtaaacctgttgccaggtgtgagtgagtgagagcgCGTGGGTAGGACGGTCGCAACAACTGGGACAGTCGACACTGCAGCTCACTATAACCACACCAATCATCGCTGTCGAAAGTTTGAGAGCATTTGGAAAAACCCGCGACGACTGAAGTCCATGATAACCTTCTTACAGCGCTTAATGAAAACCTGGAACTCCTACAACCAGGACTTACTGAACACGAGCCATTCAGTAGAAAAGTATGACTGAAACTCCCAAACCGCTGATGGGCAATGAGCTCGCGCAAGAGAACGGTCAATCTGGGGAAGTCAGAGGGAGCTCAGAAGAACAAGAGATGAAAGGCATAACCCAAACACCCAAACAACCGATGGGAAAAGCAACGGATGGGAAGAACCCAGAAGAGCAAGAGGCTCTGGAAGTCACAGTGCAGTTCACAGCAGCACCTCAGTCTACTGATTCTTTGTATTATACAAGTTACAAACAGAGGAGTGACGAGTTTCGCAAGTTATTCAAAGAGGTTCCTGAGCATGAGAAATTGGTTGTAGACTACACCTGTGCGCTCCAGAAAGATATCCTGTTACAGGGACGCATCTACTTCACAGAGAACTGCTTATGTTTCTACAGTCATGTGTTTCGTGGAACAAAAATCATGGTAAATATGAAGGATATCATCTCAGTATCCAAAGAGAAGACTGCAAAATGGATACCAAATGCCATTCAGATCAGTACTAATTCAGAAAAGCTCTTCTTTAGCTCCTTCTCAACAAGAGAGAAAAGTTACCAAAGTATATTTCGCCTTTGGCAGAATGTTCTGATGGAAAAgAAATTGACTAAGTTGGAGCTGTTGCAGATGGTTAGGCAACATTATGGCAACGACTTAGGATTGAGTCATGATGAAATGGAAAGTTTTCAAACATCAGTAGATACGATCACGCCTACCCTTCCCAGTCTGAATATGCGCGGAGAGGATTACACCGGGAGGCCAGAAAGGCCAACATCTCTTCGTCTTCCTCACGGAGAGCTAAATTCCTATGAGGCCTCCACACCACAAGGAGACGACACACAGTCTTCAGTGGGTCTGCACAGTGTGCTCTCAGCAAACGGAGGGGATGATTCTCTCAGCACCCCATCCCATCAGCTCAGTCCAAATCTGTCATTAAACCGCTCTGGGTCTGAACGGGTGTCAAAACGTTCCTCTTTCTCTCTGGATCTGAATGCTAATGAAGACCAGCTCTCTGACAACAGCAGATCTGACAGTCTGGAAGAGGTGGAAGAACGTGAAACCGCATCTCCGGTGTCTCAGGGAAGACTGTTTGTGAACCGGGTCTTTCACATCAGCGCTGAGAAGATGTTTAACTTGCTTTTCTCCGATTCTAGTTTCACAAGGAGGTTTATGGATATCAGGAAAATCACAgGTATAACCGCTACCCCTTGGAAAAAGGAGGCCTCTGGCTGTATGAAACGAACTTTGAACTACACCATCACCATTAACAACCCTCTAGTTGGCAAGTTCTCCACTGCTACAGAGACCCAGACATTATATAAAGAGTCAAGGGAGGGTCAGTACTACATGATAGATTCAGAGGTCTACACCCATGATGTTCCTTATCATGACTACTTCTACACTCAGAATCGCTACTGTATCATTCGTAACTCCAAGCACAAGTGCAGACTCAGGATTTACACTGATGTCAAATACAAAAAGCAGCCTTGGGGTCTTGTTAAATCCTTTATCACCAAAAACTCCTGGAGTGGCCTAGAAGACTACTTTAGACACCTTGAGGCAGAGCTGCTAGATGAAGAAGCAGAGTTGACTCAAGGAAGTGGAGATGCTGGGAAGACGGGTGCTTTGCGCAGGAGAAGAAGAACGTATAGTCGCACCTTGCAGGAACACATGAAGCCGGCAAAAGCACAGTACAGCACAGACTCAGAACAGCAGAGGACTGGAACCATGGGTCCAATGGACATCAAGAACACACCACACCGATGGAACATCACTTCAGTTGTGTTTGGAATGAGCTTAATACTTTTTGTTCTAGTGGTTCTGAACTTGGGGCTCTTCTTCAAACTTTGGGCCATGGAAGATGTTGCTCACCGCATGTATCTCAACACTAAGCACAGAATGAAGGAGAGGGTAGAGTCCAGtttgcCACCTGACCTAGGGCCCAGACACGGTATGCCTCATAGAAGTCAGGAGGAAGTTCATTTACTGAGAGCGGTGCTGCAGGACTCCATTAACCTTCTTGagcagCTCCGCAGTTCACTACTAGTGCTTCAGCAGAACTTTCAGGTGTACAACAGAACCTCCTCTCCACTGTAAATGGTTTTGAGTTTGGTGACCCGACAGCACAAGGGTATTCATCCCATAAGACCTGCCCGCTTCTGAGGACTGTTGCCATAGGGGCACTGCCACCCCAGGGCAGAATCGTAGCTTGGTTCATCGTCTCTTAGGCCAGGTTTGTTGCCGTTGgacgtttttttattttgaagcttgaTTTCGTCCCAGAGGAGATGTTCACATTTAAAGACTGAAGATGAAAGAGAATTTGTGAACTTAAAGCTGAAGGAGAAGAGTGGCTGTCTTTTTCTCGTTCTTCACAGTTGATGTTGCTGCAGTGAAAGCAACAGTGATGTAGCAGGTTGCGAAACACAATAATCTCTGGGATGCTGAACTACAACCAAGccagataaaacaaaagaaaccaaaaaaagtCTTGGACTTAAGGGGTTTGGTGTGGCTGCAAAGGGTATCTGATGATTGAGCTGGCAATGCAGGCCCGTTGCCTTTGGTTCATGTTAAAGGTCTGCCTAACATTTGCTCTTGTGgtcttttttttcttgatttagaCCGTTGTTGTCTTAAGATACATCTAAGAATTTATTAAAGCAGGGATCAACACTGACAAATGATTGTGAAATTTGTATATTTGTAGATTTTTGGATACACATCCGGTTTTTAATATTGTGTAAAGGTACAGCTTTATGTGGAGAAGATAAAGAACTGGAGGTTTAATGTAAATGGAGTGGTGATGCTTTATGTACCTAGAAATGGTTTACACCTTTTGGTTGTTGAGCTTTTAGATACTATATTGTAACTACTGTGAAATAAACTTGTGAATTCTGTACAATGGACAAAGTAAACGTTAATTTATTAAAAGACGATGTgtaattttcaagcatttatataTGCTTTTTGTTTTGGATTATTGGCCCGTTTTcatcagaatttttaaaaaatttcttctgaaactatttataaataaaaatctcaTCACATTACAATGTTTAAGTTGTGatcatttttaatttacagtagCCAACATTTGATCAAAAAGGTTTATTAAAATTGTCGTGAGACCAGAATGGACTTCCATAGGGTTATTCGATATGttaaggacaactttgatgaaaggttgtGATCCTGTTttaatgttgactactgtatacacaGCTATGGAAGAAATGAGAGCACTTCTCTGTTTGTCTTGGTTTATTAGGCTTTACTTTATAATGTAGGTCTcatgacatttcttccaaatttcaaataaactATTGAGAAAATGAAAAGTGGTCAAAACGAATATTttaattttgctatttaaaatCAGGATTACTCTCCTGAAGTTAAAACCGTGGTATTGTgctgtctaaaaatgaataagaACGCATctgaaaacaatttttttgtattttaggtcgaattttttttttttttttttttgtcattttattgtcaaaatgctgtttattttatttccttgaCAGAACCTATAAGTGATGTGCTGTCGCATTCACTGAGGACTGAGCATGCACGTTGAACTACTGCACTGCACATCAGGACTTACTGTACTCTTTAAATTAAATAGCAATCATCCTcctaaaaaaaaagcttatttttctGATCATACAGAGAACTTGGTAGGTAAAACTGTTTTTCCAGTAAACAgagaaatgtaataataataaatccaatatatcattatttatttatgaaaacctCTTCAAAGAAAGTATGTTTATGATCTCTACTACACATACCAAATTTAGGTACAGATTCAGTTTTCCACCTCAAAATCATCCTTTTGGCAATTACCATACCAAATAACATGGCTTgtctttatatttattaaacatctctAAGTTACTAAATATCGCAACAACAGCTAGAAGTGGACATGGTTTAAAAAACTTTAGAAAAACACATCAAATATATTTTCAATTACAAATTCTTGTAATTTAGGACACGACCGTATTAAGTGGGTTAGGGACCCTTTTGTTGTTTTACACCTAATACAGAGTGGAGATATCTGAGGAAACGTCTGCAGTTTCTCCTTAGATAAGTATAGCTTATGCAGGGTTTTAGATTGAACATTAATTAAGCAT
>TCONS_00046314
GCAAATTGAAAGCGTGCTTGTCCTCGCTGCTTTatgagctggaggagtttgactgtaagtaaacctgttgccaggtgtgagtgagtgagagcgCGTGGGTAGGACGGTCGCAACAACTGGGACAGTCGACACTGCAGCTCACTATAACCACACCAATCATCGCTGTCGAAAGTTTGAGAGCATTTGGAAAAACCCGCGACGACTGAAGTCCATGATAACCTTCTTACAGCGCTTAATGAAAACCTGGAACTCCTACAACCAGGACTTACTGAACACGAGCCATTCAGAAAAGTATGACTGAAACTCCCAAACCGCTGATGGGCAATGAGCTCGCGCAAGAGAACGGTCAATCTGGGGAAGTCAGAGGGAGCTCAGAAGAACAAGAGATGAAAGGCATAACCCAAACACCCAAACAACCGATGGGAAAAGCAACGGATGGGAAGAACCCAGAAGAGCAAGAGGCTCTGGAAGTCACAGTGCAGTTCACAGCAGCACCTCAGTCTACTGATTCTTTGTATTATACAAGTTACAAACAGAGGAGTGACGAGTTTCGCAAGTTATTCAAAGAGGTTCCTGAGCATGAGAAATTGGTTGTAGACTACACCTGTGCGCTCCAGAAAGATATCCTGTTACAGGGACGCATCTACTTCACAGAGAACTGCTTATGTTTCTACAGTCATGTGTTTCGTGGAACAAAAATCATGGTAAATATGAAGGATATCATCTCAGTATCCAAAGAGAAGACTGCAAAATGGATACCAAATGCCATTCAGATCAGTACTAATTCAGAAAAGCTCTTCTTTAGCTCCTTCTCAACAAGAGAGAAAAGTTACCAAAGTATATTTCGCCTTTGGCAGAATGTTCTGATGGAAAAgAAATTGACTAAGTTGGAGCTGTTGCAGATGGTTAGGCAACATTATGGCAACGACTTAGGATTGAGTCATGATGAAATGGAAAGTTTTCAAACATCAGTAGATACGATCACGCCTACCCTTCCCAGTCTGAATATGCGCGGAGAGGATTACACCGGGAGGCCAGAAAGGCCAACATCTCTTCGTCTTCCTCACGGAGAGCTAAATTCCTATGAGGCCTCCACACCACAAGGAGACGACACACAGTCTTCAGTGGGTCTGCACAGTGTGCTCTCAGCAAACGGAGGGGATGATTCTCTCAGCACCCCATCCCATCAGCTCAGTCCAAATCTGTCATTAAACCGCTCTGGGTCTGAACGGGTGTCAAAACGTTCCTCTTTCTCTCTGGATCTGAATGCTAATGAAGACCAGCTCTCTGACAACAGCAGATCTGACAGTCTGGAAGAGGTGGAAGAACGTGAAACCGCATCTCCGGTGTCTCAGGGAAGACTGTTTGTGAACCGGGTCTTTCACATCAGCGCTGAGAAGATGTTTAACTTGCTTTTCTCCGATTCTAGTTTCACAAGGAGGTTTATGGATATCAGGAAAATCACAgGTATAACCGCTACCCCTTGGAAAAAGGAGGCCTCTGGCTGTATGAAACGAACTTTGAACTACACCATCACCATTAACAACCCTCTAGTTGGCAAGTTCTCCACTGCTACAGAGACCCAGACATTATATAAAGAGTCAAGGGAGGGTCAGTACTACATGATAGATTCAGAGGTCTACACCCATGATGTTCCTTATCATGACTACTTCTACACTCAGAATCGCTACTGTATCATTCGTAACTCCAAGCACAAGTGCAGACTCAGGATTTACACTGATGTCAAATACAAAAAGCAGCCTTGGGGTCTTGTTAAATCCTTTATCACCAAAAACTCCTGGAGTGGCCTAGAAGACTACTTTAGACACCTTGAGGCAGAGCTGCTAGATGAAGAAGCAGAGTTGACTCAAGGAAGTGGAGATGCTGGGAAGACGGGTGCTTTGCGCAGGAGAAGAAGAACGTATAGTCGCACCTTGCAGGAACACATGAAGCCGGCAAAAGCACAGTACAGCACAGACTCAGAACAGCAGAGGACTGGAACCATGGGTCCAATGGACATCAAGAACACACCACACCGATGGAACATCACTTCAGTTGTGTTTGGAATGAGCTTAATACTTTTTGTTCTAGTGGTTCTGAACTTGGGGCTCTTCTTCAAACTTTGGGCCATGGAAGATGTTGCTCACCGCATGTATCTCAACACTAAGCACAGAATGAAGGAGAGGGTAGAGTCCAGtttgcCACCTGACCTAGGGCCCAGACACGGTATGCCTCATAGAAGTCAGGAGGAAGTTCATTTACTGAGAGCGGTGCTGCAGGACTCCATTAACCTTCTTGagcagCTCCGCAGTTCACTACTAGTGCTTCAGCAGAACTTTCAGGTGTACAACAGAACCTCCTCTCCACTGTAAATGGTTTTGAGTTTGGTGACCCGACAGCACAAGGGTATTCATCCCATAAGACCTGCCCGCTTCTGAGGACTGTTGCCATAGGGGCACTGCCACCCCAGGGCAGAATCGTAGCTTGGTTCATCGTCTCTTAGGCCAGGTTTGTTGCCGTTGgacgtttttttattttgaagcttgaTTTCGTCCCAGAGGAGATGTTCACATTTAAAGACTGAAGATGAAAGAGAATTTGTGAACTTAAAGCTGAAGGAGAAGAGTGGCTGTCTTTTTCTCGTTCTTCACAGTTGATGTTGCTGCAGTGAAAGCAACAGTGATGTAGCAGGTTGCGAAACACAATAATCTCTGGGATGCTGAACTACAACCAAGccagataaaacaaaagaaaccaaaaaaagtCTTGGACTTAAGGGGTTTGGTGTGGCTGCAAAGGGTATCTGATGATTGAGCTGGCAATGCAGGCCCGTTGCCTTTGGTTCATGTTAAAGGTCTGCCTAACATTTGCTCTTGTGgtcttttttttcttgatttagaCCGTTGTTGTCTTAAGATACATCTAAGAATTTATTAAAGCAGGGATCAACACTGACAAATGATTGTGAAATTTGTATATTTGTAGATTTTTGGATACACATCCGGTTTTTAATATTGTGTAAAGGTACAGCTTTATGTGGAGAAGATAAAGAACTGGAGGTTTAATGTAAATGGAGTGGTGATGCTTTATGTACCTAGAAATGGTTTACACCTTTTGGTTGTTGAGCTTTTAGATACTATATTGTAACTACTGTGAAATAAACTTGTGAATTCTGTACAATGGACAAAGTAAACGTTAATTTATTAAAAGACGATGTgtaattttcaagcatttatataTGCTTTTTGTTTTGGATTATTGGCCCGTTTTcatcagaatttttaaaaaatttcttctgaaactatttataaataaaaatctcaTCACA
>TCONS_00046315
CCTTATCATGACTACTTCTACACTCAGAATCGCTACTGTATCATTCGTAACTCCAAGCACAAGTGCAGACTCAGGATTTACACTGATGTCAAATACAAAAAGCAGCCTTGGGGTCTTGTTAAATCCTTTATCACCAAAAACTCCTGGAGTGGCCTAGAAGACTACTTTAGACACCTTGAGGCAGAGCTGCTAGATGAAGAAGCAGAGTTGACTCAAGGAAGTGGAGATGCTGGGAAGACGGGTGCTTTGCGCAGGAGAAGAAGAACGTATAGTCGCACCTTGCAGGAACACATGAAGCCGGCAAAAGCACAGTACAGCACAGACTCAGAACAGCAGAGGACTGGAACCATGGGTATAAACCTATATTTCTTGTTTTGAATACCAAAATCTCTACTAGCCTGCATAACTTTTGCACTGTTCAGGTGTATTTGGTTGTTTGTGCTTTTCGATACTTAAACATGATGTATTAGACTTAAAATG
>TCONS_00046316
GGAAACGCACAGGTTACTGGCGTTTAACAGAAATTGACTAAGTTGGAGCTGTTGCAGATGGTTAGGCAACATTATGGCAACGACTTAGGATTGAGTCATGATGAAATGGAAAGTTTTCAAACATCAGTAGATACGATCACGCCTACCCTTCCCAGTCTGAATATGCGCGGAGAGGATTACACCGGGAGGCCAGAAAGGCCAACATCTCTTCGTCTTCCTCACGGAGAGCTAAATTCCTATGAGGCCTCCACACCACAAGGAGACGACACACAGTCTTCAGTGGGTCTGCACAGTGTGCTCTCAGCAAACGGAGGGGATGATTCTCTCAGCACCCCATCCCATCAGCTCAGTCCAAATCTGTCATTAAACCGCTCTGGGTCTGAACGGGTGTCAAAACGTTCCTCTTTCTCTCTGGATCTGAATGCTAATGAAGACCAGCTCTCTGACAACAGCAGATCTGACAGTCTGGAAGAGGTGGAAGAACGTGAAACCGCATCTCCGGTGTCTCAGGGAAGACTGTTTGTGAACCGGGTCTTTCACATCAGCGCTGAGAAGATGTTTAACTTGCTTTTCTCCGATTCTAGTTTCACAAGGAGGTTTATGGATATCAGGAAAATCACAgGTATAACCGCTACCCCTTGGAAAAAGGAGGCCTCTGGCTGTATGAAACGAACTTTGAACTACACCATCACCATTAACAACCCTCTAGTTGGCAAGTTCTCCACTGCTACAGAGACCCAGACATTATATAAAGAGTCAAGGGAGGGTCAGTACTACATGATAGATTCAGAGGTCTACACCCATGATGTTCCTTATCATGACTACTTCTACACTCAGAATCGCTACTGTATCATTCGTAACTCCAAGCACAAGTGCAGACTCAGG

Function

symbol description
gramd1c Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-88 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C).

Ensembl:

ensembl_id ENSDARG00000076238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046313 False 4507 mRNA 0.40 19 21131874 21150169
TCONS_00046314 False 3328 mRNA 0.44 19 21132981 21150100
TCONS_00046315 False 480 lncRNA 0.43 3 21137175 21139396
TCONS_00046316 True 885 processed_transcript 0.47 7 21139322 21144300

Neighbor

gene id symbol gene type direction distance location
XLOC_023417 zdhhc23b coding downstream 267 21122836 ~ 21131607 (-)
XLOC_023416 qtrt2 coding downstream 41290 21058779 ~ 21090584 (-)
XLOC_023415 kpna1 coding downstream 175093 20941360 ~ 20956781 (-)
XLOC_023413 CR450812.1 coding downstream 179202 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding downstream 205062 20922544 ~ 20926812 (-)
XLOC_023419 atp6v1ab coding upstream 3951 21154120 ~ 21172122 (-)
XLOC_023420 boc coding upstream 56074 21206243 ~ 21258945 (-)
XLOC_023421 spice1 coding upstream 180584 21330753 ~ 21369754 (-)
XLOC_023422 atp8a2 coding upstream 221110 21371279 ~ 21512425 (-)
XLOC_023423 gpr12 coding upstream 433905 21584074 ~ 21588914 (-)
XLOC_023665 dre-mir-735 misc upstream 17027792 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 600061 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 944444 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 946849 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1068824 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1077617 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 812883 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 903640 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1158775 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1221817 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1728772 22878941 ~ 23218030 (-)

Expression


Co-expression Network