XLOC_023424 (usp12a)


Basic Information

Item Value
gene id XLOC_023424
gene name usp12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21600320 ~ 21620316 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046335
CTCACGGGGACTCCTCTTCGCCTCCGCGCGGTGATTGGGTGGAAGATGGCGCTGGGCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAGATCGGCTCGGAGCAGTTCCCAGTCAACGAGCATTACTTCGGATTGGTCAACTTCGGAAACACCTGCTACTGTAACTCTGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTTCGGGAGAAGATCCTCGCGTACAGGAGTCAACCGCGCCGCAAGGAGAACCTGCTCACCTGCCTGGCTGACCTGttccacagtatagccaaccagAAGAGGAAAGTTGGCGTTATACCGCCGAAGAAGTTCATTACGCGACTACGGAAAGAGAATGAACTGTTTGATAACTACATGCAGCAAGATGCACATGAGTTTCTCAACTACCTGCTGAACACTATAGCAGATCTGCTCCAAGAAGAGCGCAAACAAGACAAGCAGAATGGCAAGCTTGCCAACGGCACACTCGATTCCCAGAACAATAACAGCACCCCACCCTCCACCACCTGGGTTCATGAGATCTTCCAGGGCACGTTGACCAATGAGACGCGATGCCTCACCTGCGAAACGATAAGCAGCAAAGATGAGGATTTCTTGGATTTGTCAGTGGACGTGGAGCAGAACACTTCAATCACGCACTGTCTCAGAGGTTTCAGTAATACAGAGACGTTGTGCAGTGAATATAAATATTACTGTGAGGAATGCAGAAGTAAACAGGAGGCACACAAACGAATGCGGGTTAAGAAACTTCCCATGATCCTCGCCTTGCACTTGAAGAGATTTAAATACATGGAGCAGCTGCAGCGCTACACTAAGCTAAGCTACCGTGTGGTCTTCCCTCTGGAGCTCCGCCTCTTTAACACCTCTGGTGACGCCACCAATCCCGAGAGGCTTTACGACCTGGTCGCTGTGGTGGTGCATTGTGGCAGTGGTCCAAACCGAGGACACTACATCGCAATTGTAAAAAGTCATGATTTCTGGCTACTGTTTGATGACGACATTGTAGAGAAAATCGATGCCCAGGCGATTGAAGAGTTCTACGGATTAACCTCGGAAATTTCCAAGAACTCTGAGTCCGGCTACATCCTGTTTTACCAGTCCAGAGACTGAGCGCGGCCTGAGTGAGGCCAGAGTGGCGTCCCGTTACGGACACCTGTGCAGCAGCAGCGGCGGTGGCACGTCTGTGTGCAGAAGAGCCTGCAGCGgcgcctccacacacacacacccaaacccCACCCGTCCCAGCCCTCCCTCGCCGACCTCCACGCAGCAGCAACGTTGGACGCGATGCGGTCGCAAGGCCTTTTGAACGTTGTTTGTCAGTTGTATTTACGTTGTGGGAGCGTTTCATCACtcgtgttcagtcctttactgtAGAGAGAATGTGTTTTAATGTGACAGACTGGGATTTGCATTCAACTTTCATGCTGCGACCTTTTGATTCCTGTGGCTGTGAGGAGGCTGAAGACATGTGCATGGGGGGAATAGCGGGTGTGTTTATTAAAGCGGCGGGGAGGGTCTAAACGCTCCGGGTGCGGGGCATTGCGGGTTATGTATTTCTACCTTGTACAGAGTgatatttgtataaatattatgagaattataataatattactgatATAGCCAAAAAAGAGGATAGAACCAGAAAAAGATGTATAACACTATGGTGCACTTTTGATACAGTTTTGTAGATGTTGGAAGGTTCATGTGAGGGTTTGCTTGAGACGGCCTGTTGTGAAATTATCATTTtctgttttaaagaaaaagaaataaaagtgtATACACCAA
>TCONS_00046337
TGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAGATCGGCTCGGAGCAGTTCCCAGTCAACGAGCATTACTTCGGATTGGTCAACTTCGGAAACACCTGCTACTGTAACTCTGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTTCGGGAGAAGATCCTCGCGTACAGGAGTCAACCGCGCCGCAAGGAGAACCTGCTCACCTGCCTGGCTGACCTGttccacagtatagccaaccagAAGAGGAAAGTTGGCGTTATACCGCCGAAGAAGTTCATTACGCGACTACGGAAAGAGAATGGTGAGATAGAAGGGATTGGATTTTAATTAGTTTCAGTGTTATTTCTTAGTTTAAGAATGGATTTAGATGTTGGCACCAATAGCTTTGTGGCTAGTGAGTCAAcacattgaccttattcttcacttAAAATTTGGCGCAgctattggaatctttttggcttcacacttccggtctcattcacttgcattggtttttaa

Function

symbol description
usp12a Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060228-3 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).

Ensembl:

ensembl_id ENSDARG00000078109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046335 False 1853 mRNA 0.49 9 21600320 21620316
TCONS_00046337 True 539 lncRNA 0.46 3 21611602 21620256

Neighbor

gene id symbol gene type direction distance location
XLOC_023423 gpr12 coding downstream 11406 21584074 ~ 21588914 (-)
XLOC_023422 atp8a2 coding downstream 87895 21371279 ~ 21512425 (-)
XLOC_023421 spice1 coding downstream 230566 21330753 ~ 21369754 (-)
XLOC_023420 boc coding downstream 341375 21206243 ~ 21258945 (-)
XLOC_023419 atp6v1ab coding downstream 428198 21154120 ~ 21172122 (-)
XLOC_023426 lnx2a coding upstream 26001 21646317 ~ 21674996 (-)
XLOC_023427 urad coding upstream 66960 21687276 ~ 21689146 (-)
XLOC_023428 flt3 coding upstream 71623 21691939 ~ 21713883 (-)
XLOC_023429 flt1 coding upstream 130494 21750810 ~ 21808819 (-)
XLOC_023430 CR352265.1 coding upstream 192811 21813127 ~ 21819010 (-)
XLOC_023665 dre-mir-735 misc upstream 16557645 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1068507 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1412890 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1415295 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1537270 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1546063 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 342736 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 433493 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 688628 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 751670 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1258625 22878941 ~ 23218030 (-)

Expression


Co-expression Network