XLOC_023426 (lnx2a)


Basic Information

Item Value
gene id XLOC_023426
gene name lnx2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21646317 ~ 21674996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046338
AAACACCGCTCCAAGAAAGATACGGGGGTGTTTTGACGTGCGGATGCGGCTCGGGGAAGCTGCGGTGGATGTGATTGAGCTCCATGATTCTCCCCTCTCGGGGCCAGAGTTCACAGCATCCGAGAAGAACGCGAATAGAGTGATGTCACTGTGCCTGCCAGGGGGTGGTCGTCCCCTGCCGGAGTCGCACAGCCTCTGACGCCCGCGGGATGGACTGAGTGAGTGTAGCCAAAGCCGAGAGCAATGGGCAGTCTGGGAGAGGGAGTGGACCCGGGCATGGTGAGCGAAGCTCTTCTGGAGGCCCTTTGCTCTGAATGTGGACAGATTCACCGCACCTGGGAGAACCACCTTTATAACTATCGTTTGGAAGTGGATGATGATTTGGTGTGCCACATCTGCCTTCAGCCGTTAGTTCAGCCCCTGGATACACCATGTGGCCACACCTTCTGTGCCCGCTGTCTGCGCAGCTTCCTGCAGGAACGGGACTTCTGTCCACTGGACCGTGCGCATCTGCAGCTGCAGGTCTGCCGGCGCTCCAGCATTCTGGTGCACAAGCTGCTGGACAAGTTGTCGGTCACCTGTCCGCTCACGCCCTCCTGCTCGCTCAGCATGCCTCGCTGCGACCTGGAGGCACATCTCAAACACAGGTGTCCTGGAACACAGAGTCAGCGAACAAAGCTAGAGCGGACGCAGATGGAGGGAAGTGAGGACAGGGTCACAGCGACCAATCCCCCCAAATCCCCCCAGACTGAGATAAAGGAAGACACGCCATCACCACCTGCTGGATCCAATGCATGCAACAATGTTCCTACATGGACAGAAGAGCCTGGTATAGACAACCCTGCCTTTGAAGAAAGCACAGAAGAAGACAgTGTTCATGGTCTTGAGTGTGCTCTTCCACGTGTGAAGCGTCCTCTCAGCAACCCATGCATTCATCTTCTTCGCACTGGCAGTTCGGCTTCTTCAGGATGGGACTTTGTTGAAACTCTTCCTCTTTCTGCTGAAGAAGGTTGTGTAAAACTTCCTTCTCTACCTGAGGGAGAAATCACTACTATTGAGGTTCACCGTACAAACCCCTACTCGGAGATGGGCATAAGTATTGTGGGTGGAAATGAGACTCCCCTGATAAATGTGGTAATACAGGAGGTGTACCGTGACGGTGTTATAGCCCGAGACGGAAGGCTGCTGGCCGGAGACCAAATACTTCAGGTGAACAATGTAGACATCAGTAACGTGCCCCATAACTTTGCTCGCTCTACACTGGCCCGTCCCTGTGCTACCCTTCAGCTGACGGTTTTAAGAGAGCGCCGCTGCTCTGCCAGGCCACCTGCAGCAACTGCATCACCCAAGGGCAGCCCTGCCAGCATACGCATCACCCTGCACAAGAGGGAATCATCAGAGCAGCTGGGCATCAAGCTTGTGCGGCGTACAGATGAAGCCGGCGTTTTTATTCTGGATCTGCTGGAGGGAGGCTTAGCTGCGAAAGATGGGCGACTCTGCAGCAACGACAGGGTGCTGGCTGTCAATGAGCATGACCTGAGACATGGCACGCCAGAGCTGGCAGCTCAGATTATACAGGCTAGCGGAGAAAGAGTCAATCTGCTGATTAGCCGGTCCAGCAAGCAGACTATGGCGGTGCACACAGGCTCCACCTTGACCAGGGACATTTGGAGCCATGATCACATCCCGCCACTTCCCAGTACTGCGACCCCAAGTCCCGTCCCCAGTCTGCACCTTGCCAGGTCTTCCACCCAGAGAGATCTCTCCCAGTGTGTGAACTGTAAAGAGAAACACATCACTGTGAAGAAGGAGCCTCATGAGTCTCTGGGAATGACTGTGGCAGGAGGACGGGGCAGCAAAAGTGGGGAACTGCCCATATTTGTGACGAGCGTCCAGCCCCATGGCTGCCTGTCACGTGACGGACGAATCAAACGTGGGGATGTACTGTTAAGTATTAACGGTCAGGATTTGACCTACCTGAGCCACAGCGAAGCAGTTGGCACCCTGAAGTCCAGCGCCACGTCCTGCTCTGTTCAGCTGAAAGCACTAGAAGTCACCATGGTGGAAGAGCCAGGCCTGGACGAAGAGCTTCTCCCTCCACACGAAAATGACTACGATGCAAGCTGGTCGCCATCATGGGTCTTGTGGCTTGGGCTTCCCAGCTACCTGCATAGCAGTCATGAGATCGTCCTCCGCAGGAGTCACCCTGGCAGCTGGGGCTTCAGCATTGTTGGAGGTTATGAGGAGAACCACAGCAACCAGGCATTCTTTATCAAGACTATCGTCCTTGGAACTCCCGCATACTACGATGGTCGTCTAAAGTGTGGTGACATGATAGTTGCTGTAAACGGTCTGTCCACAGCTGGCATGAGTCATTCCGCGCTTGTGCCCATGCTTAAGGAGCAGCGGAGCAGGGTGGCGCTTACGGTTGTGTCCTGGCCAGGAAGTCTGATCTAACTCAACCAGGACACCATGCCACACCCCAGACAACACTCATATCTGTGTCTTCTAATGGTCCTATGTGTTCTACTCTCTGCCACGGAGGCACCATACTGTCAAAGCCAGAGTctcgaaaaaaaaacaacaacaacgaatgCTTTTACTTGATGCTGAACAAACCAGGCCTTAGAAAACCTGCCACGCCCATGAGGCTTTTCCCCCTCTGGAGAGCAGCCTTAAGGTCTCCCCTCACCATGCCGATCAGCAGTCCACTCTACCGGAGGTTTTATATTCATGTTATCTCTAAATGTGATCTACGTTTGTGAATGTTTGTGAAAAAGAGAGACAGAACAAACAGTGTATGTATGCGTGCAagtatgaatggatgaatgtgcacagctgtttaataaatctttcCCAGTGAGGACACC
>TCONS_00046339
CGGCTCGGGGAAGCTGCGGTGGATGTGATTGAGCTCCATGATTCTCCCCTCTCGGGGCCAGAGTTCACAGCATCCGAGAAGAACGCGAATAGAGTGATGTCACTGTGCCTGCCAGGGGGTGGTCGTCCCCTGCCGGAGTCGCACAGCCTCTGACGCCCGCGGGATGGACTGAGTGAGTGTAGCCAAAGCCGAGAGCAATGGGCAGTCTGGGAGAGGGAGTGGACCCGGGCATGGTGAGCGAAGCTCTTCTGGAGGCCCTTTGCTCTGAATGTGGACAGATTCACCGCACCTGGGAGAACCACCTTTATAACTATCGTTTGGAAGTGGATGATGATTTGGTGTGCCACATCTGCCTTCAGCCGTTAGTTCAGCCCCTGGATACACCATGTGGCCACACCTTCTGTGCCCGCTGTCTGCGCAGCTTCCTGCAGGAACGGGACTTCTGTCCACTGGACCGTGCGCATCTGCAGCTGCAGGTCTGCCGGCGCTCCAGCATTCTGGTGCACAAGCTGCTGGACAAGTTGTCGGTCACCTGTCCGCTCACGCCCTCCTGCTCGCTCAGCATGCCTCGCTGCGACCTGGAGGCACATCTCAAACACAGGTGTCCTGGAACACAGAGTCAGCGAACAAAGCTAGAGCGGACGCAGATGGAGGGAAGTGAGGACAGGGTCACAGCGACCAATCCCCCCAAATCCCCCCAGACTGAGATAAAGGAAGACACGCCATCACCACCTGCTGGATCCAATGCATGCAACAATGTTCCTACATGGACAGAAGAGCCTGGTATAGACAACCCTGCCTTTGAAGAAAGCACAGAAGAAGACAGATGGGACTTTGTTGAAACTCTTCCTCTTTCTGCTGAAGAAGGTTGTGTAAAACTTCCTTCTCTACCTGAGGGAGAAATCACTACTATTGAGGTTCACCGTACAAACCCCTACTCGGAGATGGGCATAAGTATTGTGGGTGGAAATGAGACTCCCCTGATAAATGTGGTAATACAGGAGGTGTACCGTGACGGTGTTATAGCCCGAGACGGAAGGCTGCTGGCCGGAGACCAAATACTTCAGGTGAACAATGTAGACATCAGTAACGTGCCCCATAACTTTGCTCGCTCTACACTGGCCCGTCCCTGTGCTACCCTTCAGCTGACGGTTTTAAGAGAGCGCCGCTGCTCTGCCAGGCCACCTGCAGCAACTGCATCACCCAAGGGCAGCCCTGCCAGCATACGCATCACCCTGCACAAGAGGGAATCATCAGAGCAGCTGGGCATCAAGCTTGTGCGGCGTACAGATGAAGCCGGCGTTTTTATTCTGGATCTGCTGGAGGGAGGCTTAGCTGCGAAAGATGGGCGACTCTGCAGCAACGACAGGGTGCTGGCTGTCAATGAGCATGACCTGAGACATGGCACGCCAGAGCTGGCAGCTCAGATTATACAGGCTAGCGGAGAAAGAGTCAATCTGCTGATTAGCCGGTCCAGCAAGCAGACTATGGCGGTGCACACAGGCTCCACCTTGACCAGGGACATTTGGAGCCATGATCACATCCCGCCACTTCCCAGTACTGCGACCCCAAGTCCCGTCCCCAGTCTGCACCTTGCCAGGTCTTCCACCCAGAGAGATCTCTCCCAGTGTGTGAACTGTAAAGAGAAACACATCACTGTGAAGAAGGAGCCTCATGAGTCTCTGGGAATGACTGTGGCAGGAGGACGGGGCAGCAAAAGTGGGGAACTGCCCATATTTGTGACGAGCGTCCAGCCCCATGGCTGCCTGTCACGTGACGGACGAATCAAACGTGGGGATGTACTGTTAAGTATTAACGGTCAGGATTTGACCTACCTGAGCCACAGCGAAGCAGTTGGCACCCTGAAGTCCAGCGCCACGTCCTGCTCTGTTCAGCTGAAAGCACTAGAAGTCACCATGGTGGAAGAGCCAGGCCTGGACGAAGAGCTTCTCCCTCCACACGAAAATGACTACGATGCAAGCTGGTCGCCATCATGGGTCTTGTGGCTTGGGCTTCCCAGCTACCTGCATAGCAGTCATGAGATCGTCCTCCGCAGGAGTCACCCTGGCAGCTGGGGCTTCAGCATTGTTGGAGGTTATGAGGAGAACCACAGCAACCAGGCATTCTTTATCAAGACTATCGTCCTTGGAACTCCCGCATACTACGATGGTCGTCTAAAGTGTGGTGACATGATAGTTGCTGTAAACGGTCTGTCCACAGCTGGCATGAGTCATTCCGCGCTTGTGCCCATGCTTAAGGAGCAGCGGAGCAGGGTGGCGCTTACGGTTGTGTCCTGGCCAGGAAGTCTGATCTAACTCAACCAGGACACCATGCCACACCCCAGACAACACTCATATCTGTGTCTTCTAATGGTCCTATGTGTTCTACTCTCTGCCACGGAGGCACCATACTGTCAAAGCCAGAGTctcgaaaaaaaaacaacaacaacgaatgCTTTTACTTGATGCTGAACAAACCAGGCCTTAGAAAACCTGCCACGCCCATGAGGCTTTTCCCCCTCTGGAGAGCAGCCTTAAGGTCTCCCCTCACCATGCCGATCAGCAGTCCACTCTACCGGAGGTTTTATATTCATGTTATCTCTAAATGTGATCTACGTTTGTGAATGTTTGTGAAAAAGAGAGACAGAACAAACAGTGTATGTATGCGTGCAagtatgaatggatgaatgtgcacagctgtttaataaatctttcCCAGTGAGGACA

Function

symbol description
lnx2a Enables ubiquitin protein ligase activity. Acts upstream of or within exocrine pancreas development and protein phosphopantetheinylation. Is expressed in central nervous system; endoderm; and pancreatic system. Orthologous to human LNX2 (ligand of numb-protein X 2).

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060228-2 Enables ubiquitin protein ligase activity. Acts upstream of or within exocrine pancreas development and protein phosphopantetheinylation. Is expressed in central nervous system; endoderm; and pancreatic system. Orthologous to human LNX2 (ligand of numb-protein X 2).

Ensembl:

ensembl_id ENSDARG00000029177

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046338 False 2870 mRNA 0.54 11 21646317 21674996
TCONS_00046339 True 2726 mRNA 0.54 11 21646319 21674950

Neighbor

gene id symbol gene type direction distance location
XLOC_023425 AL929009.3 coding downstream 9134 21603588 ~ 21637183 (-)
XLOC_023424 usp12a coding downstream 26001 21600320 ~ 21620316 (-)
XLOC_023423 gpr12 coding downstream 57403 21584074 ~ 21588914 (-)
XLOC_023422 atp8a2 coding downstream 133892 21371279 ~ 21512425 (-)
XLOC_023421 spice1 coding downstream 276563 21330753 ~ 21369754 (-)
XLOC_023427 urad coding upstream 12280 21687276 ~ 21689146 (-)
XLOC_023428 flt3 coding upstream 16943 21691939 ~ 21713883 (-)
XLOC_023429 flt1 coding upstream 75814 21750810 ~ 21808819 (-)
XLOC_023430 CR352265.1 coding upstream 138131 21813127 ~ 21819010 (-)
XLOC_023431 CR352265.3 coding upstream 166242 21841238 ~ 21847945 (-)
XLOC_023665 dre-mir-735 misc upstream 16502965 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1114504 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1458887 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1461292 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1583267 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1592060 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 288056 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 378813 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 633948 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 696990 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1203945 22878941 ~ 23218030 (-)

Expression


Co-expression Network