XLOC_023427 (urad)


Basic Information

Item Value
gene id XLOC_023427
gene name urad
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21687276 ~ 21689146 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046340
AATATTGGCTTTTGCCATTTCCAGAAGAGTTTGTAGAAGACACACTGCAGAACCATGGATATAAATGTTGTAAATGCTCTAGCATATGAAGATTTTGTGAAATTATTTGGTAATGTGGTTGAGAAATGCCCCCTCATCTCAGCCGCTATATGGTCCTATCGACCATTTAAAGATCTAGCAGACATCGAGGCTCGCATATCGGAATTTATTCACAGTCTACCAGACTCAGGTAAAGAGGGCATTTTGCGGTGTCATCCTGATTTGGCGGGCCGGGATCTCCAGAGCGGCACTCTAACACCGGAGTCCCAAGAAGAGCAGAGTCAAGCCGGTATGACCACGCTGGATTCCGCAGAGATTGTGCACATGTACCGTCTAAACTCGGAGTACAAAGAGCGCTTTGGCTTCCCTTTTGTCATCTGCGCGCGTCTCAACAACAAAGCGGACATTGTGCGTCAACTGTCCGAGCGCCTGAAGAACCGCAGAACAGCGGAGCTCGAGTGCGCGATCGAAGAGGTTAAAAAAATCTGCAGCCTCAGGTTACACAGTATTGTCCTATCTGACATTCAAACCAAACTATAACTTAAAAGATAGCCTTAATTGCTAAAGTGTTTACTGACACTCTTGATCGCCAGAATTTGTGTGGAACAAACCCAAAAATCGAGGCTATATGCAAGAAATTAATTGATTGCATATTTGTGATATGGGCCTGTAGGCTATACGTTCTCTGTACATTTACAATAAAGTTGAAGTGATAACAAA

Function

symbol description
urad Enables 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity. Predicted to be involved in urate catabolic process. Predicted to act upstream of or within allantoin biosynthetic process and purine nucleobase metabolic process. Predicted to be located in peroxisome. Orthologous to human URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase).

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0019628 urate catabolic process biological_process
GO:0019428 allantoin biosynthetic process biological_process
GO:0005777 peroxisome cellular_component
GO:0051997 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-070112-472 Enables 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity. Predicted to be involved in urate catabolic process. Predicted to act upstream of or within allantoin biosynthetic process and purine nucleobase metabolic process. Predicted to be located in peroxisome. Orthologous to human URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase).

Ensembl:

ensembl_id ENSDARG00000071579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046340 True 759 mRNA 0.44 2 21687276 21689146

Neighbor

gene id symbol gene type direction distance location
XLOC_023426 lnx2a coding downstream 12280 21646317 ~ 21674996 (-)
XLOC_023425 AL929009.3 coding downstream 50093 21603588 ~ 21637183 (-)
XLOC_023424 usp12a coding downstream 66960 21600320 ~ 21620316 (-)
XLOC_023423 gpr12 coding downstream 98362 21584074 ~ 21588914 (-)
XLOC_023422 atp8a2 coding downstream 174851 21371279 ~ 21512425 (-)
XLOC_023428 flt3 coding upstream 2793 21691939 ~ 21713883 (-)
XLOC_023429 flt1 coding upstream 61664 21750810 ~ 21808819 (-)
XLOC_023430 CR352265.1 coding upstream 123981 21813127 ~ 21819010 (-)
XLOC_023431 CR352265.3 coding upstream 152092 21841238 ~ 21847945 (-)
XLOC_023432 spata13 coding upstream 174789 21863935 ~ 21903588 (-)
XLOC_023665 dre-mir-735 misc upstream 16488815 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1155463 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1499846 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1502251 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1624226 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1633019 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 273906 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 364663 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 619798 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 682840 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1189795 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G213425 NA non-coding NC_048566.1 CM023220.2 102185943 ~ 102186958 (-)
striped catfish (Pangasianodon hypophthalmus) G204664 NA non-coding NC_047607.1 CM018553.1 3171262 ~ 3174277 (-)