XLOC_023440 (si:rp71-1f1.5)


Basic Information

Item Value
gene id XLOC_023440
gene name si:rp71-1f1.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22002090 ~ 22003031 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046362
CAGAGCTTACAGCCtgtgcttgcttgcttgtttgtttaatgtttgtgCTCCTGTTTTGGCTGAGTTTGGATTTAAAGTAATTGAGCTAAACAATAGCTACACTGCTAAATGATGGATGTTCAAAGGTATTTGGCTCGTATCGGCTGTTCTGGTCCATGTCCCCCGACACTGGAGACTCTGCGATATCTACACCTGAACCACTTACTGACGGTTCCCTTTGAAAACCTCACCATTCACACCCGGGGTCGGGTCAGGCTGGAGCTGCCACTTCTGTATGAAAAAATCGTGGTGAATCATCGTGGAGGATTCTGCTTTGAGATTAACGGACTCTTCTCCTGGCTGCTGTCTCAGATGGGTTATGATGTCACTTTGCTCTCGGCACAGGTAAGGAGTCGGTTCACCGGAGCTTACGGACCTCCATTCGACCACTTGTTCTTGATGGTGAAGGTGGATGAACACAGGTGGCTCTGCGATGTTGGGTTTGGGTCTGGATTCCAGCTTCCTCTTTCTCTTGAGACTGACAGTCCTCAGATCCAGAGCCACGGCGTTTATCGCCTCAGATCTGAAGGAAACTTGATTTTCATGGAAAGTAAGTCAGAGATTGGTGGGGAATGTTGGACAGAACAGTATAAGTTCACTCTTGAGCCTCGAGACAGAGCTGATTTCAGAGCCATGTGTGACTACCATCAGAGTTCTGTTAGCTCACTTATGTTCTGCAAGTCTCTCTGTTCACTGTTGTTGCCCACCGGGAGAATCACCATCATGGGCCGCAGACTGATTATAAGCAGTTTGGGCTCAGGTGATGGAGAACATGCATCAAGAACCATAACAGATCTTTCAGATGAAGAAATCACAGAGTTGTTGAGGGAGAAGTTTGGAATTGTTCTTCAAGCTCCACTCATTCCTAAAGATAACGTGGTTTTACCACCAATCAAGTAttaa

Function

symbol description
si:rp71-1f1.5 Predicted to enable arylamine N-acetyltransferase activity. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); contact dermatitis (multiple); leukemia (multiple); and lung disease (multiple). Orthologous to human NAT1 (N-acetyltransferase 1) and NAT2 (N-acetyltransferase 2).

GO:

id name namespace
GO:0016407 acetyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004060 arylamine N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-62 Predicted to enable arylamine N-acetyltransferase activity. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); contact dermatitis (multiple); leukemia (multiple); and lung disease (multiple). Orthologous to human NAT1 (N-acetyltransferase 1) and NAT2 (N-acetyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000114335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046362 True 942 mRNA 0.46 1 22002090 22003031

Neighbor

gene id symbol gene type direction distance location
XLOC_023439 si:rp71-1f1.4 coding downstream 10320 21990964 ~ 21991770 (-)
XLOC_023438 apoob coding downstream 12684 21978230 ~ 21989406 (-)
XLOC_023436 acot9.1 coding downstream 28725 21959708 ~ 21973365 (-)
XLOC_023437 AL627129.1 coding downstream 38922 21963052 ~ 21963168 (-)
XLOC_023435 acot9.2 coding downstream 49926 21938741 ~ 21952164 (-)
XLOC_023441 si:rp71-1f1.6 coding upstream 11779 22014810 ~ 22015751 (-)
XLOC_023442 NA coding upstream 50778 22053809 ~ 22066831 (-)
XLOC_023443 dap coding upstream 67259 22070290 ~ 22103585 (-)
XLOC_023444 ctnnd2a coding upstream 115773 22118804 ~ 22732001 (-)
XLOC_023445 AL590147.1 coding upstream 305913 22308944 ~ 22309058 (-)
XLOC_023665 dre-mir-735 misc upstream 16174930 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1470277 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1814660 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1817065 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1939040 20060691 ~ 20063050 (-)
XLOC_023446 CT573489.1 non-coding upstream 368955 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 875910 22878941 ~ 23218030 (-)
XLOC_023450 CT573302.1 non-coding upstream 1270211 23273242 ~ 23273359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04832762_04833610 NA coding CI01000018 null 4832354 ~ 4833768 (-)