XLOC_023447 (zc2hc1a)


Basic Information

Item Value
gene id XLOC_023447
gene name zc2hc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22740543 ~ 22756566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046374
AGTTGCTACAGCATCGTCCTTAGTGTCTCGCCAggcaaaaaagatggaggaaatTGAAGaATCTCCTCCTACTTCTGAAGAGCTGGTGCCCTGCAAAATATGTGGAAGGAGTTTCTTTCCGAAGGTTCTGAAAAAACATGTGCCGATCTGCCAGAAGACAGCGGCCAAGAGGAGGAAGGTGTTTGATTCTGGCAGGCAAAGAGCAGAGGGGACCGAAATTTCTACAGTCAAACCCATAAAACCAAAGTTACAAAGTTCTTCCAGCAGCTCTAAGTCTGATAAACCTGAGCCACCCAAGAAGCAGTCCAACTGGCGCCGAAAGCACGAAGAATTCATCGCCACTATTCGTGCTGCCAAATCCATAAACCAAGTGATAAAAGATGGCGGACCCCTCCCTCCACCCCCTCCTCCATCGTATGATCCAGATTATATCCAATGTCCCTATTGCCAGCGGCGCTTTGGTGAGAATGCAGCAGATCGACACATCAAGTTCTGCAAGGAACAAGCATCCAGAATCTCCAATAAGAGCAAGCTTGCTGGAGGTGATAAAACTAAACCTCCAGCCAGAACTCAGTACAAACCTCCTGCACCAAAGAAGGCAAACTCTCCCACTACTTCCAGCGTGTCTTCTCGTCTACCTCAGCGCTCAGCTTATGGCCAGGGTGCTGGCACAGGAATTCCTAGCAGCAAACCCTCATCCACAGGCTCAATAAAGAGCACACCAACAGGATACTCTCCGTTACGAAACAACTCATCCGGCTTGACCAGCCCTCCCTCTGAGGGGAACATGAAACCCAAGGGTATGGTTTCACAAAGCTCACTGAGAAATCCTTCTACTGGTATAGGAATGAACAAGAAGAAGATCCAGAATGCAGATAACTGTATTTCAAGGAATGATATGAAAAACGAAAACGACTTCAATTACTCCACAACAGGCACCAAGTTTTGCCATGAGTGTGGGACCAAGTACCCAGTGGAGTCGGCCAAGTTCTGCTGTGAGTGTGGGGTAAAACGAATGTACATTTAATATGTATGAACACAAAttgtacaaatatataaaaagactGACTCACTGTAGCTCAAAAACTGAGCTTTCCTTCAAATACACTAGTGTACTTGGCGAATCCATGTGCTGTACAAATATCTCCTATCCCAAGTAAATCTGATTCCAACCTTTtgcttagttttgtttttatatggaaAAGAAGTGCAATATTATTGGTTACTGCTACAAAAGGAGTATTATCAATCttatatttacacacaaaaaaagaaagtttaaatGAACTTTTATCAATATAGGCCTTAAAACGGGACCATATCACGCCGTTCTGATGTTAACAGGGCAGTATATCGGTGTAGTTTGCTGTGTGAGGGAATTTAAGTGCTatggtttattatttaattcaatttgttagggtaaatgtttagtatgactAATGCATTGACAACGGTTCTTTTTGCTGAGCAATTcactttttgtattttacatttgtttttatatgttcTTGATTGTGTTTTTAACAGTATTCCAGATGAACATGTCCTGTAGAAGTCCtcattgtatatttattaaacgcgCAGTCATCACATCCCAAGTCCAGCATATTTACACATTCAAAACATAAAGGCGACTCGAAATGTCATTTTACATCCTTCAAAAGCAGACAAGCTTATGGGAAAAGTAGCTTTACAATGGTATTTTATTGCTTCAGAGCCTTATCACTGCTGTCCACAGGGGAGAGGTAAAGATCCATGCTGGTCTCGAGCTTAATATGAATTTCAAGCATCACCCTGTACCTTGTAATGCTTGTACTTCTGCTGCTGCTCTGACAGCGTACGTTATATCTTATGAATACCTGCTTAATGAATTACGACACAAATGTTgccattaagaaaaaaaagaatggtCAAAA
>TCONS_00046375
GAAAAGACCAATCAAAAATAAGGATACTAGCATGTGGAACCGCTACCCAGAAGAGCCCAGTTGCTACAGCATCGTCCTTAGTGTCTCGCCAggcaaaaaagatggaggaaatTGAAGaATCTCCTCCTACTTCTGAAGAGCTGGTGCCCTGCAAAATATGTGGAAGGAGTTTCTTTCCGAAGGTTCTGAAAAAACATGTGCCGATCTGCCAGAAGACAGCGGCCAAGAGGAGGAAGGTGTTTGATTCTGGCAGGCAAAGAGCAGAGGGGACCGAAATTTCTACAGTCAAACCCATAAAACCAAAGCCTGAGCCACCCAAGAAGCAGTCCAACTGGCGCCGAAAGCACGAAGAATTCATCGCCACTATTCGTGCTGCCAAATCCATAAACCAAGTGATAAAAGATGGCGGACCCCTCCCTCCACCCCCTCCTCCATCGTATGATCCAGATTATATCCAATGTCCCTATTGCCAGCGGCGCTTTGGTGAGAATGCAGCAGATCGACACATCAAGTTCTGCAAGGAACAAGCATCCAGAATCTCCAATAAGAGCAAGCTTGCTGGAGGTGATAAAACTAAACCTCCAGCCAGAACTCAGTACAAACCTCCTGCACCAAAGAAGGCAAACTCTCCCACTACTTCCAGCGTGTCTTCTCGTCTACCTCAGCGCTCAGCTTATGGCCAGGGTGCTGGCACAGGAATTCCTAGCAGCAAACCCTCATCCACAGGCTCAATAAAGAGCACACCAACAGGATACTCTCCGTTACGAAACAACTCATCCGGCTTGACCAGCCCTCCCTCTGAGGGGAACATGAAACCCAAGGGTATGGTTTCACAAAGCTCACTGAGAAATCCTTCTACTGGTATAGGAATGAACAAGAAGAAGATCCAGAATGCAGATAACTGTATTTCAAGGAATGATATGAAAAACGAAAACGACTTCAATTACT
>TCONS_00046376
CAGTTGCTACAGCATCGTCCTTAGTGTCTCGCCAggcaaaaaagatggaggaaatTGAAGaATCTCCTCCTACTTCTGAAGAGCTGGTGCCCTGCAAAATATGTGGAAGGAGTTTCTTTCCGAAGGTTCTGAAAAAACATGTGCCGATCTGCCAGAAGACAGCGGCCAAGAGGAGGAAGGTGTTTGATTCTGGCAGGCAAAGAGCAGAGGGGACCGAAATTTCTACAGTCAAACCCATAAAACCAAAGTTACAAAGTTCTTCCAGCAGCTCTAAGTCTGATAAAGTAAGTTGAATGTTTGACTATGTATATTCTTTTTG

Function

symbol description
zc2hc1a Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3132 Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A).

Ensembl:

ensembl_id ENSDARG00000027915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046374 False 1916 mRNA 0.42 10 22740543 22756508
TCONS_00046375 False 948 mRNA 0.48 9 22741533 22756566
TCONS_00046376 True 319 lncRNA 0.44 4 22750958 22756509

Neighbor

gene id symbol gene type direction distance location
XLOC_023444 ctnnd2a coding downstream 8542 22118804 ~ 22732001 (-)
XLOC_023446 CT573489.1 coding downstream 368443 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 coding downstream 431485 22308944 ~ 22309058 (-)
XLOC_023443 dap coding downstream 636958 22070290 ~ 22103585 (-)
XLOC_023442 NA coding downstream 673712 22053809 ~ 22066831 (-)
XLOC_023448 NA coding upstream 122375 22878941 ~ 23218030 (-)
XLOC_023449 zfhx4 coding upstream 484878 23241444 ~ 23323526 (-)
XLOC_023450 CT573302.1 coding upstream 516676 23273242 ~ 23273359 (-)
XLOC_023451 NA coding upstream 626546 23383112 ~ 23642905 (-)
XLOC_023452 hnf4g coding upstream 890078 23646644 ~ 23675446 (-)
XLOC_023665 dre-mir-735 misc upstream 15421395 38177961 ~ 38178027 (-)
XLOC_023437 AL627129.1 non-coding downstream 777375 21963052 ~ 21963168 (-)
XLOC_023407 NA non-coding downstream 2208730 20450027 ~ 20531813 (-)
XLOC_023461 NA non-coding upstream 1338750 24095316 ~ 24098879 (-)
XLOC_023466 NA non-coding upstream 1659758 24416324 ~ 24503022 (-)

Expression


Co-expression Network