XLOC_023451


Basic Information

Item Value
gene id XLOC_023451
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23383112 ~ 23642905 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047188
CCCCCGTCTGCTTTTTCCCCGGTCCAAGAAGAGTCTAGCTCAACCCCAGACACATACGCgtgctcacacacactcactcacgctCAAACACAGTGAAATAGGGCGATTCAGAGGACGGAAACGTTctgTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTATGTAGACTGCTGCTGAAGGCGACGTTTCATCTGCCATTTCACAGAGCCGTTTCTCCTTCTGACCTACAGCAGCCATTTCCTACGCTGACTGCCTCCTGTAATTGAAGATTTGCACCAAACAAACAGAAGATGTATAAAGTATATACTGCAGTAGAATGGCTAAGATGAAATACAAGAAGTGAAATGAGTCTTGATAATGAGACCCTGCACATCTGGAGCAGACCAGCTCCGCTCTGCATCTTCAGTCCGCCGACGTACAGGTCAAGGTAACTGGTTAAAACtgataacagcgggaaagccgtccatacggaggtaggcggtcagctggtaagaaaaggaatggtgtcataccgccccgtagcattcattttaaagatgaaatgcagccatacatagcaaacgttttcagaataagcctatgcgGAGATATCTGGAATGTTAACTGAGGTCATTACCTTAAAT
>TCONS_00047189
gttctaaaatattttcagaaataGCAAACGTTTATTGTAGGCGTGTTCTTAGTTTCTGGTGTTGTCCAATTAGACAGCTCGGCTAATTAATCTCAAATGTTAGGCTAGgctatttcaaatgtattttcagACAAACAAATTCGATAAAGATGTAATTAGAATTTGTGAAATTATTGTAAATTACTTTATTCTTCGCTCGCATTTCCTAATAAGTTTAAACGGAAGTGAAGAGGCAGCCCAACGTTACTTTATCTGAGGCCTAACTCGTTTGTTTACATAAGCTAGCATGTTGTACATTTCTGACACACGAGATAAAGTCGGGATTTTCTAAACATATTTCTTCAACGTCACTGTGGAAAGTCGGCGAAAGTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTATGTAGACTGCTGCTGAAGGCGACGTTTCATCTGCCATTTCACAGAGCCGTTTCTCCTTCTGACCTACAGCAGCCATTTCCTACGCTGACTGCCTCCTGTAATTGAAGACCTGAACCTTGCCATTGACTCCGCTCCTTGTCTTGCGTCGTTTCAAGCCGTCCTCATGAAGAAACTCAGAAGGGCAGCAGGAAAAAAAG
>TCONS_00047190
gttctaaaatattttcagaaataGCAAACGTTTATTGTAGGCGTGTTCTTAGTTTCTGGTGTTGTCCAATTAGACAGCTCGGCTAATTAATCTCAAATGTTAGGCTAGgctatttcaaatgtattttcagACAAACAAATTCGATAAAGATGTAATTAGAATTTGTGAAATTATTGTAAATTACTTTATTCTTCGCTCGCATTTCCTAATAAGTTTAAACGGAAGTGAAGAGGCAGCCCAACGTTACTTTATCTGAGGCCTAACTCGTTTGTTTACATAAGCTAGCATGTTGTACATTTCTGACACACGAGATAAAGTCGGGATTTTCTAAACATATTTCTTCAACGTCACTGTGGAAAGTCGGCGAAAGTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTATGTAGACTGCTGCTGAAGGCGACGTTTCATCTGCCATTTCACAGAGCCGTTTCTCCTTCTGACCTACAGCAGCCATTTCCTACGCTGACTGCCTCCTGTAATTGAAGATAGCCCCAGCGGCCGGCTGATCCTTCAGTTCTGACTCAGAAGTGACAAGGTGGAGGAATGCCTGATTGTGCTGTGATCTGATGGCCAGTGGCTTGTGTGTGTGAAAGGGTTTCAGCCGCAGAAACACACCCCCATCAGCCTGTCCTTTCTCTCCCCAGGGAAAGAATAGAGCGTCTTGCGCTTACCATCCATAtgaagaaatgaataaaatagaaATGAGACATTCAAGTGACAGCTTCAGCTTTAAATGATGCTGGCAAAAGCCATGGATTGTCAGTGGCTCTCTCTGCCCGCTTTGTTgatgaaatgaaaaatgtattgtCAGGGAGaaaggatgatttttttttctttttctctataTTGTTGAGAATAATATGACGTGATGAGTGGTCATCTTGAATTTACGAACATGTTCTTGGGGTGCTAGTCAGTATAATGTAATTCTAGAAATGGCTGTTAATTCATATAAATCAGGGGTGACCAATGGCTGCCTTTGTCAAGCTCAGAAATGAATTCAGTCGTTATTAGTATTCCATTATTAATCGTTTCAGTGGGAGACTCTTTTTAAGGATTCTTCGATAAGTAGAAAATGCATTGGaactttatttattacttaatgcAAATCTTTTGCtgtgatttaaataattttataataagaaATTTTAGCAGACATTCACttgtaaatacactttttaaaaaatataaacacaaaaccTACCTTTTAACAATtagaaaaaaagaatattaaaaacacaaccaacagtcataaaaataataattaaacaaaaaataaaatagcatttccccaaccaaccacccaccaGTGCTATCCAATGGTAAAAGTAGGTACTAAAGGCATAGTATACATATAAATCACAAGTTCGTAGACAAGAAATAAAAaggcaaacatttttttcaaataacaaaacCTTGTCTATTAAGgtataacagatttttttctacATGGAATATTGGAACTTATTTTTTATggaagtatttttaaaatgttaattaccCCAACTGTTTAAATGGAAATGTATAGTAGTTTAGTGAGTTCAGACAAAAATATTAGGCAGCACATTGGTTTTTCGATAGTAATAGTAAAACTGTTACTATATTGTTACAAATGTTACTTGgcatatttttaacatttcttaAGGACATTGTATGAATGACTGACAGTAATAATGACTGCTGATTAAAGATATACCACTACATTTTTATATCATTTCATGCAGCCTCAAACAAACCAATATGTGATTAATCAGTGATATTTGCCAATGCTGATAAGGTTAAGGGTCTGCCTTTTGTctctatttttaaatgaatagtaaTTAACTTCACTTTAGCTGTGACAGACTTGCCATATTCCTTGGAGTAACAGCCTATAAGGTGTATAACAAAATTAGCTGTATCAAGAGTTGACTGAACCTCGAACTTACAGAATTTTAGCAGTGCAGATCTCACTGATTACCACCCAGTTAAGGGAGTAAACAAGACAAGTTTACAGAGTATACAGCTGTCTGACCTGATCACAAGCTAATTTTACCAAGTGATGGCTAATAACACAAAAAAGCAGCTTATTTTGGACAAAACTGATGATTGGTCTATACACTGATGCATCTTTGACTTTAagaatatataacaatatataacacTATTTTTCTACTGCATTGTTTTCTAGAAATAAATGCAGCTTAGGTGAACATAAGATAAACCTTGCAAAAATCCCCCCAAATTCCATGTTGTCCCATTGCATGACAATGTGAAGTTGACAAAACTGGTTCACGCTACCTTTAAACACTGAGGCACACACAAAATACAAAcctaatattcatttatattcagTAGTCC
>TCONS_00047191
gttctaaaatattttcagaaataGCAAACGTTTATTGTAGGCGTGTTCTTAGTTTCTGGTGTTGTCCAATTAGACAGCTCGGCTAATTAATCTCAAATGTTAGGCTAGgctatttcaaatgtattttcagACAAACAAATTCGATAAAGATGTAATTAGAATTTGTGAAATTATTGTAAATTACTTTATTCTTCGCTCGCATTTCCTAATAAGTTTAAACGGAAGTGAAGAGGCAGCCCAACGTTACTTTATCTGAGGCCTAACTCGTTTGTTTACATAAGCTAGCATGTTGTACATTTCTGACACACGAGATAAAGTCGGGATTTTCTAAACATATTTCTTCAACGTCACTGTGGAAAGTCGGCGAAAGTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGTAAGAGCTAGCAGTATGGAGGTTGACAGGAGCACTGGCTTTCTGGTGCAGGAACACAGTCCCATGGTCATGTCCATGAGTTGGAGTGGATAACCCAAAGCGCCCAAACCGGCCCGCTAACACTCAAATCCATGTTTAAAGATGCTGTCAGGTTTAAGACGGATAGGAAGAAGCATGGAGAAGTTGCTACCAGGTAATTTCAGGGCAAGAAACATTGCTTGAAATCACCTGCAATGATGCGATGGGAAGGAAAATCTGAATTGTGTGTATGCTATTGCTGTTCAAAAGTTTAAAGAGGCTTATTCTCACCAAGTCTGCTTTAATTTGATTGCAAATACAGTAGAAACTGCAATATTGTGACAC
>TCONS_00046387
TTGTGGACAATTCCGTAGGCCAAGCGAGTGCAAGGCAAAGGGAATTAATCACAGCCAGAGCGGGAGGTCACTGACTGGCTCCCGAAACATCACGGTTGGGTCATGCGTCTCGGGGCCACGGCTTCATACACACACCACCACACTGTCTTATCCCCCGTCTGCTTTTTCCCCGGTCCAAGAAGAGTCTAGCTCAACCCCAGACACATACGCgtgctcacacacactcactcacgctCAAACACAGTGAAATAGGGCGATTCAGAGGACGGAAACGTTctgTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGTAAGAGCTAGCAGTATGGAGGTTGACAGGAGCACTGGCTTTCTGGTGCAGGAACACAGTCCCATGGTCATGTCCATGAGTTGGAGTGGATAA
>TCONS_00046388
TTGTGGACAATTCCGTAGGCCAAGCGAGTGCAAGGCAAAGGGAATTAATCACAGCCAGAGCGGGAGGTCACTGACTGGCTCCCGAAACATCACGGTTGGGTCATGCGTCTCGGGGCCACGGCTTCATACACACACCACCACACTGTCTTATCCCCCGTCTGCTTTTTCCCCGGTCCAAGAAGAGTCTAGCTCAACCCCAGACACATACGCgtgctcacacacactcactcacgctCAAACACAGTGAAATAGGGCGATTCAGAGGACGGAAACGTTctgTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTAAGAAAAGATACCAAACAACTCACAGTAAGACAAGCAGAGAGCTGCCCTGCACAGCGCcctatttttttttccccctttcttTTTTGCGGCGACTAGATATTCATTTTCACACCTCACTTCTCCATATTTATGATTGCCCAtgagaacattttttatttatgttgactTCTTTCATAAACTGGACAgcggtttctttttttttctctctttctccatGTGTGTCAAAACAATCTCTGATTTATAATTTATGTGATTTATG
>TCONS_00046389
GAtatcggtgagcaaatcaaggcaaaaacaatAGTATAACTTCATTCTATCAAAAATGagggttttgtttttactgtaatcagttcataataaaatgcaaaaaaacaaaacaaaaaaaaacatgctgcattagGCCTAATGTAAAGCaatgtttagttatttttaaacattattaaataaattaggaaattacccatggcaactataataaccttcggcccactagccttaatcaagtttggtttttggcctttcataagaaaaagtttgggcatccaggttctaaaatattttcagaaataGCAAACGTTTATTGTAGGCGTGTTCTTAGTTTCTGGTGTTGTCCAATTAGACAGCTCGGCTAATTAATCTCAAATGTTAGGCTAGgctatttcaaatgtattttcagACAAACAAATTCGATAAAGATGTAATTAGAATTTGTGAAATTATTGTAAATTACTTTATTCTTCGCTCGCATTTCCTAATAAGTTTAAACGGAAGTGAAGAGGCAGCCCAACGTTACTTTATCTGAGGCCTAACTCGTTTGTTTACATAAGCTAGCATGTTGTACATTTCTGACACACGAGATAAAGTCGGGATTTTCTAAACATATTTCTTCAACGTCACTGTGGAAAGTCGGCGAAAGTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGGTAAGAAAAGATACCAAACAACTCACAGTAAGACAAGCAGAGAGCTGCCCTGCACAGCGCcctatttttttttccccctttcttTTTTGCGGCGACTAGATATTCATTTTCACACCTCACTTCTCCATATTTATGATTGCCCAtgagaacattttttatttatgttgactTCTTTCATAAACTGGACAgcggtttctttttttttctctctttctccatGTGTGTCAAAACAATCTCTGATTTATAATTTATGTGATTTATG

Function

GO:

id name namespace
GO:0034448 EGO complex cellular_component
GO:1990131 Gtr1-Gtr2 GTPase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047188 False 692 lncRNA 0.48 5 23383112 23632901
TCONS_00047189 False 669 lncRNA 0.42 5 23466434 23642626
TCONS_00047190 False 2434 lncRNA 0.36 4 23501944 23642626
TCONS_00047191 False 831 lncRNA 0.41 4 23589475 23642626
TCONS_00046387 False 470 lncRNA 0.54 4 23589745 23633052
TCONS_00046388 False 640 lncRNA 0.47 2 23599781 23633052
TCONS_00046389 True 1010 lncRNA 0.36 2 23599781 23642905

Neighbor

gene id symbol gene type direction distance location
XLOC_023449 zfhx4 coding downstream 59586 23241444 ~ 23323526 (-)
XLOC_023450 CT573302.1 coding downstream 109753 23273242 ~ 23273359 (-)
XLOC_023448 NA coding downstream 165082 22878941 ~ 23218030 (-)
XLOC_023447 zc2hc1a coding downstream 626546 22740543 ~ 22756566 (-)
XLOC_023444 ctnnd2a coding downstream 651111 22118804 ~ 22732001 (-)
XLOC_023452 hnf4g coding upstream 3739 23646644 ~ 23675446 (-)
XLOC_023453 pign coding upstream 44505 23687410 ~ 23716097 (-)
XLOC_023454 MCMDC2 coding upstream 87003 23729908 ~ 23758003 (-)
XLOC_023455 SGK3 coding upstream 115605 23758510 ~ 23784701 (-)
XLOC_023456 rrs1 coding upstream 194614 23837519 ~ 23839647 (-)
XLOC_023665 dre-mir-735 misc upstream 14535056 38177961 ~ 38178027 (-)
XLOC_023446 CT573489.1 non-coding downstream 1011012 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1074054 22308944 ~ 22309058 (-)
XLOC_023442 NA non-coding downstream 1316281 22053809 ~ 22066831 (-)
XLOC_023461 NA non-coding upstream 452411 24095316 ~ 24098879 (-)
XLOC_023466 NA non-coding upstream 773419 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding upstream 849298 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 910888 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 1157871 24800776 ~ 24829401 (-)

Expression


Co-expression Network