XLOC_023452 (hnf4g)


Basic Information

Item Value
gene id XLOC_023452
gene name hnf4g
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23646644 ~ 23675446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046390
AAAGCATGGAAAAACCCTACTGATTTAAAACAGAAGTTCTGTTTGTTGAAATGTAAGTTCCTAGTTCTCCTACATGCATTAAGAAGGTAATAATGCTGCCATATTTTAGTTCTGACATGGCACATTACTTTATAAGAGTGTCACTTTACCTAAGAATCAGGCCTGTTTGTTGGCCTGCACCAATAAAACCTTCTTGTTCCTTTCTGGAACAAATGGGGAATACTATTATCTCTTTATCCTTCTGATAAGTATAGGATAAAGCGAGAGGAGATAAGTTCTGCGCAAAAAGGTGAGGAGTCTTGGCCAAGGCTCCTCCCTTGTCTTAGAAGACGACAAATCAGCATTCTGAAGAGATGGTCAACCTAAGGCTGCCCTCACTTCTCTCTCCCAGAGACACTGTCCCAGGACGACTTTAAGTAGAGATAGCCAGGCAGGGATGAAGTTTTCTCCAACTCCTCTCCCTAAATCCTTGTTGGACATGGATGTAGCCAATTACTGCGAGGGCCTGGACCCGACCTATAGCACACTAGGCTTTGAGAACGCAGAGGTGCTTTATTGTGGTGAAAACATGCCGACAGAGCCCAACATCAGTCAAGGAGAAAATGGCGTGAGCTCCAACTGCGCGATCTGTGGGGACAAAGCCACAGGTAAACATTATGGCGCCTCCAGCTGTGACGGATGCAAAGGCTTCTTCCGCCGCAGTATCAGGAAGAGCCATGTCTACTCTTGCAGgttTAATCGTCAATGTGTGGTCGATAAAGACAAAAGGAACCAGTGTCGTTTTTGCAGACTTCACAAATGCTTTCGAGCTGGAATGAAGAAAGAAGCTGTTCAGAATGAGCGGGATCGAATCAGCTCACGGAGGAACATACAGGACTCACATGACCTGCCGCCAATCACAGCCCTCGCTCACGCTGAAGCACTTTCACAGCAGCAGATCACGGCCGCCAGTCCAATGGGCCCTGCTGATGTTTCAGAGAAAAAATCAGCCACTATCAGTGACGTCTGTGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCAGCCTTCGGCGAATTGCCACTTGATGACCAGGTTAGTTTATTACGAGCTCATGCTGGCGAGCATCTTCTGCTTGGTGTGGCTAAGAGGTCAATGTCATACAAAGACCTCTTGCTTTTAGGTAATGGCTGTGTCATCCACCGAAACTGCCCTGAGCCGGAGATAGGCCGCGTATCTAACAGAGTCTTGGATGAACTAGTTTTACCTTTCCAGGACATCCAAATTGACGACAATGAATACGCCGCTCTGAAGGCCATTGTATTCTTCGACCCTGACGCCAAAAGCTTAAGAGACCCATCTAAGATCAAGGCGATGCGTTATCAGGTTCAGATGAGCCTGGAAGACTACATTAATGACCGGCAGTATGATTCACGCGGGCGATTCGGGGAGCTTCTACTGCTGCTTCCGACTCTGCAAAGCATCACCTGGCAGATGATTGAGCAGCTACAGTTTATCAAGCTCTTTGGTCTGGCTAAGATTGATAACCTGCTGCAGGAGATGCTTCTCGGGGGTCTAACCACAGAGCAACCTCACTTACATCACAATGGTCACCCTCAGATTCCCATAACAGGACAGACTATTGTCATTAGCTCCATACCAGGACCTGCACATCCACAGATGGcaTCCCCAGAAACCCCTATTCCATCCCCCACTTCAGTACAGAACCAGGAGGTCTTCAAACCTTCTGGCAGCCCTGCTCTCCTGCTGCCTCCACAGACCATGCCAAACAGACCCTCTCCGGAGCCCCCGCTATGAGTCTCCTCTCTTGTGCAGGTGTGTTTGTAGATGTGTAAATGCTTCCCCACCTCCAGCGCTTCagaactttacaaaaaaaaaaaaatcaaatttactGTCAAAGTGGACCATCATGAATTGAAAAGTGATTGTTTCGTTTAGGATAGTTGGAGAGTTTTAGGTTTTATGTGGTTTCTGTTTAGCTGAATGCTGGTAACCTAGAGGATATGCATTTATTGGTGACAAAATATTGTCagttacaaaacatttttttattgtattaatgacaaataaatcaagaattaatttattaacaaaattatactgtaaaacattgaagaaatgttcatttgtggccttaaacacaataaaaaaattagtgcttgcattgtttttattaatgaatggattatgtattttgtgtgcttaattacttttttaatgtattttattgctTTTGGTGACCTGAAATCACAAATTTTTGAAAACGTTTTGAAGTTTTAGAGTGCAAGTGTCACACGTGGAGATCAAAGCAAGGAACAACACGAGGGTCCAGGTGCAGGTAAAATAAGATTATATTAAAGGCAATCAAGGTCAAACAAAAGTAGCTGGTACAAGAAGTGCAATccaaaaacattatcaaaaaaCAGACATTAAGTCAAAAATCTGGTGTGTGTGAGATGaagggatttgtagttcttaaCAGCATCTGTAGTTCACCAGCAATTTGTCAGGagtggatcgctggtgatcgtgacagcaAGCTTTCCAATATCCTTAATCCATGTGTTTTTGTGaaaaatgtaatatatgtaaatgtaaatataaaaaaatttaatatgcatgcttattgtacatgtatgtaacatctatacacactcattcacactcacactacggagaatttagcttacccagttcacctataccacatgtctttggacttgtgggggaaaccagagcacctgtaggaaacccatgcgaacatggggagaacatgcaaactccacacagaaacactaactgagccagccgaggcttaaaccagcgactttcttgctgtaaggcgaatgtgccacccactgtgccaccacatcgcctttattaaatataatattaaaaaacaaaacaaatgttgtaatttatgtttttcatGACAGGTGATAATATACATATACCATATATTATTTaacggcacggtggctcagtggtttgtacTGTCGTTtgcatgctggaatagttgtcggtttaATCCACTGTAACttctgataaatgagggactaagctgagggaaaatgaatgaattaatagatttttttaaaataaatatcatattAGAAATATGATAATGATACATCTGTTGataaatatattagaaatatgataagtatcattttattttttatgcctcTTTTTGCTCACAAAGGATACATCAATTTGACTgtcaaaaaaagtatttttaatgtaAGCTATTTCTGCATTCAGATATTCTTGTGAAGTTTTCAGTGTCCATTGAGTCTTCAGTGTGCC
>TCONS_00046391
AAGACGACAAATCAGCATTCTGAAGAGATGGTCAACCTAAGGCTGCCCTCACTTCTCTCTCCCAGAGACACTGTCCCAGGACGACTTTAAGTAGAGATAGCCAGGCAGGGATGAAGTTTTCTCCAACTCCTCTCCCTAAATCCTTGTTGGACATGGATGTAGCCAATTACTGCGAGGGCCTGGACCCGACCTATAGCACACTAGGCTTTGAGAACGCAGAGGTGCTTTATTGTGGTGAAAACATGCCGACAGAGCCCAACATCAGTCAAGGAGAAAATGGCGTGAGCTCCAACTGCGCGATCTGTGGGGACAAAGCCACAGGTAAACATTATGGCGCCTCCAGCTGTGACGGATGCAAAGGCTTCTTCCGCCGCAGTATCAGGAAGAGCCATGTCTACTCTTGCAGgttTAATCGTCAATGTGTGGTCGATAAAGACAAAAGGAACCAGTGTCGTTTTTGCAGACTTCACAAATGCTTTCGAGCTGGAATGAAGAAAGAAGCTGTTCAGAATGAGCGGGATCGAATCAGCTCACGGAGGAACATACAGGACTCACATGACCTGCCGCCAATCACAGCCCTCGCTCACGCTGAAGCACTTTCACAGCAGATCACGGCCGCCAGTCCAATGGGCCCTGCTGATGTTTCAGAGAAAAAATCAGCCACTATCAGTGACGTCTGTGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCAGCCTTCGGCGAATTGCCACTTGATGACCAGGTTAGTTTATTACGAGCTCATGCTGGCGAGCATCTTCTGCTTGGTGTGGCTAAGAGGTCAATGTCATACAAAGACCTCTTGCTTTTAGGTAATGGCTGTGTCATCCACCGAAACTGCCCTGAGCCGGAGATAGGCCGCGTATCTAACAGAGTCTTGGATGAACTAGTTTTACCTTTCCAGGACATCCAAATTGACGACAATGAATACGCCGCTCTGAAGGCCATTGTATTCTTCGACCCTGACGCCAAAAGCTTAAGAGACCCATCTAAGATCAAGGCGATGCGTTATCAGGTTCAGATGAGCCTGGAAGACTACATTAATGACCGGCAGTATGATTCACGCGGGCGATTCGGGGAGCTTCTACTGCTGCTTCCGACTCTGCAAAGCATCACCTGGCAGATGATTGAGCAGCTACAGTTTATCAAGCTCTTTGGTCTGGCTAAGATTGATAACCTGCTGCAGGAGATGCTTCTCGGGGGTCTAACCACAGAGCAACCTCACTTACATCACAATGGTCACCCTCAGATTCCCATAACAGGACAGACTATTGTCATTAGCTCCATACCAGGACCTGCACATCCACAGATGGcaTCCCCAGAAACCCCTATTCCATCCCCCACTTCAGTACAGAACCAGGAGGTCTTCAAACCTTCTGGCAGCCCTGCTCTCCTGCTGCCTCCACAGACCATGCCAAACAGACCCTCTCCGGAGCCCCCGCTATGAGTCTCCTCTCTTGTGCAGGTGTGTTTGTAGATGTGTAAATGCTTCCCCACCTCCAGCGCTTCagaactttacaaaaaaaaaaaaatcaaatttactGTCAAAGTGGACCATCATGAATTGAAAAGTGATTGTTTCGTTTAGGATAGTTGGAGAGTTTTAGGTTTTATGTGGTTTCTGTTTAGCTGAATGCTGGTAACCTAGAGGATATGCATTTATTGGTGACAAAATATTGTCagttacaaaacatttttttattgtattaatgacaaataaatcaagaattaatttattaacaaaattatactgtaaaacattgaagaaatgttcatttgtggccttaaacacaataaaaaaattagtgcttgca
>TCONS_00046392
AAAGCATTGTCCAAAGTGAAGCTTTTGACATGTTAAACACTTCATGCACTCGCATTAGCTCTCTGTAACAACCTAAATATCATATTATTGGCATTACATTTCTGTTGACACACGTTCGTTTGGCTTTTGGTGGATTAATGAAAATCGTTGTTGGACGCGGAGAAGAAAACATGCCGACAGAGCCCAACATCAGTCAAGGAGAAAATGGCGTGAGCTCCAACTGCGCGATCTGTGGGGACAAAGCCACAGGTAAACATTATGGCGCCTCCAGCTGTGACGGATGCAAAGGCTTCTTCCGCCGCAGTATCAGGAAGAGCCATGTCTACTCTTGCAGgttTAATCGTCAATGTGTGGTCGATAAAGACAAAAGGAACCAGTGTCGTTTTTGCAGACTTCACAAATGCTTTCGAGCTGGAATGAAGAAAGAAGCTGTTCAGAATGAGCGGGATCGAATCAGCTCACGGAGGAACATACAGGACTCACATGACCTGCCGCCAATCACAGCCCTCGCTCACGCTGAAGCACTTTCACAGCAGATCACGGCCGCCAGTCCAATGGGCCCTGCTGATGTTTCAGAGAAAAAATCAGCCACTATCAGTGACGTCTGTGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCAGCCTTCGGCGAATTGCCACTTGATGACCAGGTTAGTTTATTACGAGCTCATGCTGGCGAGCATCTTCTGCTTGGTGTGGCTAAGAGGTCAATGTCATACAAAGACCTCTTGCTTTTAGGTAATGGCTGTGTCATCCACCGAAACTGCCCTGAGCCGGAGATAGGCCGCGTATCTAACAGAGTCTTGGATGAACTAGTTTTACCTTTCCAGGACATCCAAATTGACGACAATGAATACGCCGCTCTGAAGGCCATTGTATTCTTCGACCCTGACGCCAAAAGCTTAAGAGACCCATCTAAGATCAAGGCGATGCGTTATCAGGTTCAGATGAGCCTGGAAGACTACATTAATGACCGGCAGTATGATTCACGCGGGCGATTCGGGGAGCTTCTACTGCTGCTTCCGACTCTGCAAAGCATCACCTGGCAGATGATTGAGCAGCTACAGTTTATCAAGCTCTTTGGTCTGGCTAAGATTGATAACCTGCTGCAGGAGATGCTTCTCGGGGGTCTAACCACAGAGCAACCTCACTTACATCACAATGGTCACCCTCAGATTCCCATAACAGGACAGACTATTGTCATTAGCTCCATACCAGGACCTGCACATCCACAGATGGcaTCCCCAGAAACCCCTATTCCATCCCCCACTTCAGTACAGAACCAGGAGGTCTTCAAACCTTCTGGCAGCCCTGCTCTCCTGCTGCCTCCACAGACCATGCCAAACAGACCCTCTCCGGAGCCCCCGCTATGAGTCTCCTCTCTTGTGCAGGTGTGTTTGTAGATGTGTAAATGCTTCCCCACCTCCAGCGCTTCagaactttacaaaaaaaaaaaaatcaaatttactGTCAAAGTGGACCATCATGAATTGAAAAGTGATTGTTTCGTTTAGGATAGTTGGAGAGTTTTAGGTTTTATGTGGTTTCTGTTTAGCTGAATGCTGGTAACCTAGAGGATATGCATTTATTGGTGACAAAATATTGTCagttacaaaacatttttttattgtattaatgacaaataaatcaagaattaatttattaacaaaattatactgtaaaacattgaagaaatgttcatttgtggccttaaacacaataaaaaaattagtgcttgca

Function

symbol description
hnf4g Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04950 Maturity onset diabetes of the young
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-060929-100 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma).

Ensembl:

ensembl_id ENSDARG00000071565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046390 False 3325 mRNA 0.42 10 23646644 23671709
TCONS_00046391 False 1854 mRNA 0.46 10 23647786 23671383
TCONS_00046392 True 1782 mRNA 0.45 10 23647786 23675446

Neighbor

gene id symbol gene type direction distance location
XLOC_023451 NA coding downstream 3739 23383112 ~ 23642905 (-)
XLOC_023449 zfhx4 coding downstream 323118 23241444 ~ 23323526 (-)
XLOC_023450 CT573302.1 coding downstream 373285 23273242 ~ 23273359 (-)
XLOC_023448 NA coding downstream 428614 22878941 ~ 23218030 (-)
XLOC_023447 zc2hc1a coding downstream 890078 22740543 ~ 22756566 (-)
XLOC_023453 pign coding upstream 11964 23687410 ~ 23716097 (-)
XLOC_023454 MCMDC2 coding upstream 54462 23729908 ~ 23758003 (-)
XLOC_023455 SGK3 coding upstream 83064 23758510 ~ 23784701 (-)
XLOC_023456 rrs1 coding upstream 162073 23837519 ~ 23839647 (-)
XLOC_023457 arxa coding upstream 261383 23936829 ~ 23942722 (-)
XLOC_023665 dre-mir-735 misc upstream 14502515 38177961 ~ 38178027 (-)
XLOC_023446 CT573489.1 non-coding downstream 1274544 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1337586 22308944 ~ 22309058 (-)
XLOC_023461 NA non-coding upstream 419870 24095316 ~ 24098879 (-)
XLOC_023466 NA non-coding upstream 740878 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding upstream 816757 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 878347 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 1125330 24800776 ~ 24829401 (-)

Expression


Co-expression Network