XLOC_023456 (rrs1)


Basic Information

Item Value
gene id XLOC_023456
gene name rrs1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23837519 ~ 23839647 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046397
AGAACCAAAATGGCTTCGTGCAGTATTGAAGACGTGCTCGCTAAAGCTGAAAGAGACGAGGCTGAGAAGCTCAAAAGTATTACGGTGCTCAAAGAGTTGGATCTTGAATTCGACCCGGGACTTTTGCTGGCGTTTGACAAGAACCGACTTGACACACGGGACTTTAAAGGCAACAAACGGGAGGACTGTCTTCGCTCTTTAGCGCGAGACAACACACAACTTCTCATCAACGAGATATGGAAACTACCCACAGAGAGAGTCGACGAAGTGATCGTCGCCAAGCTGCCAGAACCGACCACTAAACTACCCAGAGAAAAACCAGCACCGAAACCTAAGCCTCCTACTAAATGGGAACAGTTTGCCAAGCTGAAAGGCATTCAGAAGAAAAAGAAGACCAACTTGGTCTGGGATGAAGTTCACAAGGAGTGGAAGAGGAGATGGGGGTATAAACGTGCCAAAGATGACACCAAAGAGTGGTTGATTGAGGTCCCGGCGACTGCAGATCCAAACGAAGACCAGTTCGCCAAAAGGAATAAAGCCAAAAAGGAAAGAGTGGCCAGAAACGAGTACAACAGACTCAAAAACATCGCCAGAGCTCAGAAGGTCAAGGTTCCTGGAACAGGACTCCTGCCTACATCCCAGCAGACCAAAGCGGAGCTGGCACAAGCGGTCAGTCTGGCCAAAATATCCACCGCATCGGTTGGCAAATTCCAGGAGAAGCTGCCCAAGGAAAAACCAGCCAGAAACACTGGGAAGAAGAGGAAATTCCAGCCTCTTATTGGGGACTTCAGTAGCGAGAAGCAAAAACAGCTGGATTTATTGAAGGTGATGGACAGTAAGAAGCCCCGTCTCGATATCACTAAAGCTGTGAATAAGCAGATGAGGGAAGAGGACTCGGAGTCTGCTCGGAATAATAAGAAAGGGTTTGGAAAGAAGGGACGCAAGGGAGGCATGCCTGGTAAAGGAAAAGGCAAAGGAAAACCTGGAGGAAAGGGAAAAGCTCCTAAAGGCAAAGGGCGCAAACCTCAGATGAAGCAAGGAAAGCGCTAAcatttaaagcagtgtggtgGACTTATGATGTTTATTGtagaatataataaatattgcacacGACTCAACTTCTCTTAAGTCATGACTTTGAGTGCCTTGCGGCTGGAGTTTGATTCAGTACAGGAATCgggtttgtttatgtgtttaggCTTTATCTACATATGTCATGGATTAAGATCATTGAACCGTTTTCATAAATGTCATCTAATATTGACTCCTGTTATTCATTCGTAATTGTGTTttcacattaaattaaaattcttTCTGATTTGCCATCAGTTCCTGGTTGGATATTGTGAATAATGAGGTTATATTTCATCcccaaagttatttaaaaatgagtATAAATGTGTCAAAGCCTGCTGTTAATGGGTAACATTTGTACTTAAATAGTATGTtcttataatgtaatataaaatatcatcAAATGTGTATTTTAGAATTATAAAGCTAAAATATCACCTTAAAAAATTGAAGCTAAGATTCAATTAATAAAGTATTTGAGCAATTTTAATGAAAAGAATATGATTAGATTTATCTTATACCATCAAATAGAGGAGACATCCCATTTCAGTGTCTACCTAAGTTCACAAATGTGATTTTTAATTACAGCAATCaaattaaatctaattaaattgtttagtgatttaaataacttttgtgaaattaaaaatatgagttaaaaACGCTGTATTGTCATTTAGTGTTATGTGAAAATGAAACCTACTGTTATTCTGATCTGTGATGTGacaaatatgtataaaataataacttaaagctttcccagagatgggttgcagctggaagggcatccactgcataaaacataaactGGAAaagatggcagttcattctgctgtggcgaccccggattaataaagggactaagccgaaaataaaatacataatttttaaagcTTAAATACGTATTGAATTAGAAAAATCTTGCTGTTAATGGGTAAAATCTGCACTTTAATAGAATGttcatataatttaatataaagtataatCCAATTAATACTCATGTAAGTGTGTTTTCTTGAATTATGAAactaaaatattcaaattaaaaaaatcaa

Function

symbol description
rrs1 Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ribosomal large subunit biogenesis; and ribosomal large subunit export from nucleus. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including eye; midbrain; musculature system; pectoral fin bud; and segmental plate. Orthologous to human RRS1 (ribosome biogenesis regulator 1 homolog).

GO:

id name namespace
GO:0000055 ribosomal large subunit export from nucleus biological_process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04626 Plant-pathogen interaction
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-9345 Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ribosomal large subunit biogenesis; and ribosomal large subunit export from nucleus. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including eye; midbrain; musculature system; pectoral fin bud; and segmental plate. Orthologous to human RRS1 (ribosome biogenesis regulator 1 homolog).

Ensembl:

ensembl_id ENSDARG00000003941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046397 True 2129 mRNA 0.38 1 23837519 23839647

Neighbor

gene id symbol gene type direction distance location
XLOC_023455 SGK3 coding downstream 52818 23758510 ~ 23784701 (-)
XLOC_023454 MCMDC2 coding downstream 79516 23729908 ~ 23758003 (-)
XLOC_023453 pign coding downstream 121422 23687410 ~ 23716097 (-)
XLOC_023452 hnf4g coding downstream 162073 23646644 ~ 23675446 (-)
XLOC_023451 NA coding downstream 194614 23383112 ~ 23642905 (-)
XLOC_023457 arxa coding upstream 97182 23936829 ~ 23942722 (-)
XLOC_023458 ndufb4 coding upstream 131409 23971056 ~ 23977285 (-)
XLOC_023459 zmp:0000000991 coding upstream 149323 23988970 ~ 23998897 (-)
XLOC_023460 lyz coding upstream 196216 24035863 ~ 24060632 (-)
XLOC_023461 NA coding upstream 255669 24095316 ~ 24098879 (-)
XLOC_023665 dre-mir-735 misc upstream 14338314 38177961 ~ 38178027 (-)
XLOC_023450 CT573302.1 non-coding downstream 564160 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 619489 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1465419 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1528461 22308944 ~ 22309058 (-)
XLOC_023466 NA non-coding upstream 576677 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding upstream 652556 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 714146 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 961129 24800776 ~ 24829401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_05910381_05911415 RRS1 coding CI01000018 null 5910118 ~ 5911415 (-)