XLOC_023458 (ndufb4)


Basic Information

Item Value
gene id XLOC_023458
gene name ndufb4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23971056 ~ 23977285 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046399
ATACCGCGAGACTCATGAACGTGACGCGCAGCCAATCAGATTCCTCCTTGTTGTCGGGGCCGTGTGAGTGTCCCCGTTAGCAAACATGTCGAGGCTAAGAGAATATAAACCGGCTCCTTTGGCCACACTTCCAAAAACATTAGACCCGGACGAGTATTACAATCTTTCCCCCGAGTACCGGCGGGCGGAGGAGGAGCGGACGGCTCTGCGGTCTCAGATGAAGAGACAGTACCAGATGCAGCTCAACAACCCCTACCGCAAAGAGCTGATTGAAGACCCTGCCCTTACCAGGTGGCTGCATGCACGTAATATCGTGTACCCGCATTTCAGACCATCTACTAAATCATCACTGATTGGCGTGGCTTTTGGAGCTTTACCTCTGGTGCTCTTGTACTTTGTGTTGAAGACAGACAGGgACAAAAGGGATTCCAAAATAGATGCCGGGACTTATAAACGCCCCTTTAAACTGTCATCCTAAAATTCTCAGTTCGCTGTTTCTTGCAACAAACAGTACTTGTAATTATATATTAAACACCTTATTGTTGAAAcgtcattactattattaaagaAAAAGGAAAAGCA
>TCONS_00046400
CGTACAGGACACAGTAAAACAGCACAACAACTTCAGAATTCCCCAGAGACATTGTTGGATTCATTTGAAACTTCCGACTTTGAGCAGGAAGTGGATGAGCTGCTAGCGTGGACCAGAGCTCTTGATTTTGATGACTATATCAATGAATGGAGGAATTTGGGCACCAGCAGATGTTACATAGTTGACAAAGGAAGACCCTGCCCTTACCAGGTGGCTGCATGCACGTAATATCGTGTACCCGCATTTCAGACCATCTACTAAATCATCACTGATTGGCGTGGCTTTTGGAGCTTTACCTCTGGTGCTCTTGTACTTTGTGTTGAAGACAGACAGGgACAAAAGGGATTCCAAAATAGATGCCGGGACTTATAAACGCCCCTTTAAACTGTCATCCTAAAATTCTCAGTTCGCTGTTTCTTGCAACAAACAGTACTTGTAATTATATATTAAACACCTTATTGTTGAAAcgtcattactattattaaagaAAAAGGAAAAGCA
>TCONS_00046401
ATACCGCGAGACTCATGAACGTGACGCGCAGCCAATCAGATTCCTCCTTGTTGTCGGGGCCGTGTGAGTGTCCCCGTTAGCAAACATGTCGAGGCTAAGAGAATATAAACCGGCTCCTTTGGCCACACTTCCAAAAACATTAGACCCGGACGAGTATTACAATCTTTCCCCCGAGTACCGGCGGGCGGAGGAGGAGCGGACGGCTCTGCGGTCTCAGATGAAGAGACAGTACCAGATGCAGCTCAACAACCCCTACCGCAAAGAGCTGATTGAAGACCCTGCCCTTACCAGGTGGCTGCATGCACGTAATATCGTGTACCCGCATTTCAGACCATCTACTAAATCATCACTGATTGGCGTGGCTTTTGGAGCTTTACCTCTGGTGCTCTTGTACTTTGTGTTGAAGACAGACAGGGGATTCCAAAATAGATGCCGGGACTTATAAACGCCCCTTTAAACTGTCATCCTAAAATTCTCAGTTCGCTGTTTCTTGCAACAAACAGTACTTGTAATTATATATTAAACACCTTATTGTTGAAAcgtcattactattattaaagaAAAAGGAAAAG

Function

symbol description
ndufb4 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; digestive system; lens; musculature system; and solid lens vesicle. Orthologous to human NDUFB4 (NADH:ubiquinone oxidoreductase subunit B4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040426-1973 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; digestive system; lens; musculature system; and solid lens vesicle. Orthologous to human NDUFB4 (NADH:ubiquinone oxidoreductase subunit B4).

Ensembl:

ensembl_id ENSDARG00000019332

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046399 False 582 mRNA 0.47 3 23971056 23974559
TCONS_00046400 False 501 processed_transcript 0.41 4 23971056 23977285
TCONS_00046401 True 572 mRNA 0.47 3 23971058 23974559

Neighbor

gene id symbol gene type direction distance location
XLOC_023457 arxa coding downstream 28334 23936829 ~ 23942722 (-)
XLOC_023456 rrs1 coding downstream 131409 23837519 ~ 23839647 (-)
XLOC_023455 SGK3 coding downstream 186355 23758510 ~ 23784701 (-)
XLOC_023454 MCMDC2 coding downstream 213053 23729908 ~ 23758003 (-)
XLOC_023453 pign coding downstream 254959 23687410 ~ 23716097 (-)
XLOC_023459 zmp:0000000991 coding upstream 11685 23988970 ~ 23998897 (-)
XLOC_023460 lyz coding upstream 58578 24035863 ~ 24060632 (-)
XLOC_023461 NA coding upstream 118031 24095316 ~ 24098879 (-)
XLOC_023462 zgc:112982 coding upstream 124526 24101811 ~ 24163201 (-)
XLOC_023463 eif1axb coding upstream 186942 24164227 ~ 24168533 (-)
XLOC_023665 dre-mir-735 misc upstream 14200676 38177961 ~ 38178027 (-)
XLOC_023451 NA non-coding downstream 328151 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 697697 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 753026 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1598956 22371986 ~ 22372100 (-)
XLOC_023445 AL590147.1 non-coding downstream 1661998 22308944 ~ 22309058 (-)
XLOC_023466 NA non-coding upstream 439039 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding upstream 514918 24492203 ~ 24492517 (-)
XLOC_023468 NA non-coding upstream 576508 24553793 ~ 24695757 (-)
XLOC_023471 NA non-coding upstream 823491 24800776 ~ 24829401 (-)

Expression


Co-expression Network