XLOC_023463 (eif1axb)


Basic Information

Item Value
gene id XLOC_023463
gene name eif1axb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24164227 ~ 24168533 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046416
ATGTCCGACCGGGAGTGCGAATAAAGTTTTGTGTTGTTGAACGAGGCAGTTCGCGCATGCGTGCTTGTCAGCTTTTCTCGCAAGCGGCGCTGATCTGCTCACCAACAGCACGTTTGAGAAGTAAAATCTTTGACATATGGTTATAACTCCCTGACGTTTCTGATCTTTACACGACAGCCGTCGACGTGCTTAAACAAATATGCCGAAAAACAAAGGAAAAGGAGGAAAAAATAGGCGACGTGGTAAGAACGAGAATGAATCTGAGAAGAGAGAGCTGGTGTTCAAAGAGGATGGACAAGaaTATGCTCAGGTCATCAAGATGTTGGGAAATGGGAGACTGGAGGCCATGTGTTTCGATGGAGTCAAGCGGCTTTGTCACATCCGAGGAAAGCTCCGgaaaaagGTGTGGATCAACACGTCAGACATTATACTCATTGGATTAAGGGACTACcagGATAACAAAGCAGATGTTATTTTGAAGTATAATGCCGACGAGGCTAGGAGTCTGAAAGCCTACGGAGAGCTTCCAGAACACGCCAAAATCAACGAGACTGATACCTTCGGGCCTGGGGATGACGATGAGATTCAGTTTGATGATATCGGTGATGATGACGAGGACATTGATGATATCTAAAAGATGCTGAGAAGTGAATATTTCTCAGTCCGAAGTGAAAATCCTCCCCAGAAGTCGCCCCTCCATCATTATGTACTCGGAGGCTCAAGTTTTAGGTTTCTCTGACTAAACACACAACCGCTTTGTCACATTCAATTCATTTTGTTatcttttaatgtatttatattgaTTTCACATCAAGTGGAATTTAGTGACAAGTACAGAATCTATGGATTCGCAATAAAAAAAGATAACCAATTTTATGTTTGGTCTTGCAGTCTGTGTCCTAAAAGACATTCAAAACCTCTGTAAAGATGAGTAAGACTCTTGTGAGAAAAGCTGATACCTCTAGATAGCCTCTTGTCTTCTTGAATGTTTTTGAAAAGTCTCATCATTTGCTGGTCACAAAATCGATGCATTGGCTGATGCATTTATTCAGAAAGCCTGTCTCCGACTTGCTCTGTTTTAATccatcttcttttcttttttctttttgtattcaaATGATTGAGTACCCCTTTTTCCAGGGCTGCTTTATGAAAATAATCTTATGTGTTACTAGCTTGACACTAAGCTACAGTAAACATCAGCAACTGAAATATTTGTAAGATGAAAATGGaaacttctttttcttttttttttactttctaaaaCGATACTCACAAAGCAAATAACCAGACTGAGTATTTTTGTATGCACGTAGGCAGATTAATGCAAAAGTCAGGAAATTTTATTGATTGTATTCCTGCAGAACTGGCCCTCTTGACTGAAAATGGTGGTTGTTGGTTATAACATGTTAATTTTAGCTGCATTGTTTTGATGAGCTCACGATGCTTGCTTTTTGTCCTCTGCTGCTTTTGATCAGAAAACCTGTGATTTTGAAATAAAATTCAACGACATTCAAAATCCta
>TCONS_00046417
GCGTGCTTGTCAGCTTTTCTCGCAAGCGGCGCTGATCTGCTCACCAACAGCACGTTTGAGAAGTAAAATCTTTGACATATGGTTATAACTCCCTGACGTTTCTGATCTTTACACGACAGCCGTCGACGTGCTTAAACAAATATGCCGAAAAACAAAGGAAAAGGAGGAAAAAATAGGCGACGTGGTAAGAACGAGAATGAATCTGAGAAGAGAGAGCTGGTGTTCAAAGAGGATGGACAAGaaTATGCTCAGGTCATCAAGATGTTGGGAAATGGGAGACTGGAGGCCATGTGTTTCGATGGAGTCAAGCGGCTTTGTCACATCCGAGGAAAGCTCCGgaaaaagGTGTGGATCAACACGTCAGACATTATACTCATTGGATTAAGGGACTACcagGATAACAAAGCAGATGTTATTTTGAAGTATAATGCCGACGAGGCTAGGAGTCTGAAAGCCTACGGAGAGCTTCCAGAACACGCCAAAATCAACGAGACTGATACCTTCGGGCCTGGGGATGACGATGAGATTCAGTTTGATGATATCGGTGATGATGACGAGGACATTGATGATGTAAGTACTGACGCGCACTTGTAATCTGAAGTTCAAGATTTACAACAAGCTATATGTTTTTGAGGGATTCATTAACAGTTTGGAATGCTCTCAATGCATgagttttacttatttattactgTTTTGTGTTAACTCTGTCGTGTATATTTCCCAGATCTAAAAGATGCTGAGAAGTGAATATTTCTCAGTCCGAAGTGAAAATCCTCCCCAGAAGTCGCCCCTCCATCATTATGTACTCGGAGGCTCAAGTTTTAGGTTTCTCTGACTAAACACACAACCGCTTTGTCAC
>TCONS_00046418
CTTTTCTCGCAAGCGGCGCTGATCTGCTCACCAACAGCACGTTTGAGAAGTAAAATCTTTGACATATGGTTATAACTCCCTGACGTTTCTGATCTTTACACGACAGCCGTCGACGTGCTTAAACAAATATGCCGAAAAACAAAGGAAAAGGAGGAAAAAATAGGCGACGTGGTAAGAACGAGAATGAATCTGAGAAGAGAGAGCTGGTGTTCAAAGAGGATGGACAAGaaTATGCTCAGGTCATCAAGATGTTGGGAAATGGGAGACTGGAGGCCATGTGTTTCGATGGAGTCAAGCGGCTTTGTCACATCCGAGGAAAGCTCCGgaaaaagGTGTGGATCAACACGTCAGACATTATACTCATTGGATTAAGGGACTACcaggtttgttttatttaattaaatgtatagctagaagtaataaaatataactcATATTTAATTGGTTAAAGGATAACTagatttttaaagcatattttatgatttagtataattatgttaatattgtaaaatactgACATTCCTTGATTGCTTTGtccaatataatataaaagatacagttaatggaaaatttaattaaatgcaatcaaatattgtaatgtaaaggactataaatataaaatattattgtacaaTGATAACCACGCTATTTTcgtttgattgtttaatttctctATTTGAACCCTGTCACACtccccag

Function

symbol description
eif1axb Predicted to enable translation initiation factor activity. Acts upstream of or within erythrocyte maturation; regulation of hemoglobin biosynthetic process; and regulation of production of miRNAs involved in gene silencing by miRNA. Predicted to be active in cytoplasm. Orthologous to human EIF1AX (eukaryotic translation initiation factor 1A X-linked).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:1903798 regulation of production of miRNAs involved in gene silencing by miRNA biological_process
GO:0046984 regulation of hemoglobin biosynthetic process biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0005515 protein binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1319 Predicted to enable translation initiation factor activity. Acts upstream of or within erythrocyte maturation; regulation of hemoglobin biosynthetic process; and regulation of production of miRNAs involved in gene silencing by miRNA. Predicted to be active in cytoplasm. Orthologous to human EIF1AX (eukaryotic translation initiation factor 1A X-linked).

Ensembl:

ensembl_id ENSDARG00000057912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046416 False 1524 mRNA 0.39 7 24164227 24168533
TCONS_00046417 False 859 mRNA 0.43 6 24164988 24168475
TCONS_00046418 True 699 lncRNA 0.35 4 24166970 24168462

Neighbor

gene id symbol gene type direction distance location
XLOC_023462 zgc:112982 coding downstream 1026 24101811 ~ 24163201 (-)
XLOC_023461 NA coding downstream 65348 24095316 ~ 24098879 (-)
XLOC_023460 lyz coding downstream 103595 24035863 ~ 24060632 (-)
XLOC_023459 zmp:0000000991 coding downstream 165330 23988970 ~ 23998897 (-)
XLOC_023458 ndufb4 coding downstream 186942 23971056 ~ 23977285 (-)
XLOC_023464 rps6ka3b coding upstream 15219 24183752 ~ 24271629 (-)
XLOC_023465 pdha1b coding upstream 104838 24273371 ~ 24282427 (-)
XLOC_023466 NA coding upstream 247791 24416324 ~ 24503022 (-)
XLOC_023467 NA coding upstream 323670 24492203 ~ 24492517 (-)
XLOC_023468 NA coding upstream 385260 24553793 ~ 24695757 (-)
XLOC_023665 dre-mir-735 misc upstream 14009428 38177961 ~ 38178027 (-)
XLOC_023451 NA non-coding downstream 521322 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 890868 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 946197 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1792127 22371986 ~ 22372100 (-)
XLOC_023471 NA non-coding upstream 632243 24800776 ~ 24829401 (-)
XLOC_023487 NA non-coding upstream 1582103 25750636 ~ 25754146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_06086167_06089014 EIF1AX coding CI01000018 null 6086072 ~ 6089014 (-)