XLOC_023464 (rps6ka3b)


Basic Information

Item Value
gene id XLOC_023464
gene name rps6ka3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24183752 ~ 24271629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046419
CATTTTATTCCTATGGAAACGCTGCACTGACTGGCAGAGGTGAGCGGAGGAAAAGGTGGCGGCGCTTTTGGATGCGCAACGGATACCCAGCTTTCTTCACTCAGTGTCAAAAGCGCGGAAACAACCAGACGTAATTTCTTCAAAGTGCCTCAGAATTTCCCTTTTGagtctgatttatttaaaaaaggagcCTTGCAAAAAGTGAAGATGCCCCTGGCACAACTAGTTGACCCTTGGAGAAAGATGGCAATCGGGAGTGCGGCGAGCGAGACGGAGCCCCATCATGTCTTGGAGGACTCAATGGGAGAAGATGAAAATCTATCATGTCAAGAAGAAGTGTCTGTTAAAGAGATCAACATCACACATCTTGTTAAAGAGGGCTCAGAGAAGGCCGACCCACAGCAGTTTGAGCTCCGTAAAGTGCTCGGACAAGGCTCTTTTGGAAAGgtgtTTTTGGTGAAGAAAACAACAGGGCCGGATGCAGGACAGCTGTATGCTATGAAAGTGCTGAAAAAAGCAACCCTGAAAGTACGGGATCAGGTCCGGACTAAGATGGAGCGGGACATCCTGGTGGAGGTTAATCATCcctttattgttaagctacactATGCATTCCAGACCGAAGGAAAGCTTTATCTGATTCTGGACTTCTTAAGAGGAGGCGATCTCTTTACTCGACTGTCAAAAGAGGTGATGTTCACTGAAGAGGATGTGAAGTTTTATTTGGCCGAACTGGCTTTGGCTCTGGATCATCTGCATGGACTGGGCATCATTTACAGAGATCTGAAACCAGAGAACATTCTCCTGGACGAGGACGGCCACATAAAGCTGACAGACTTTGGGCTCAGCAAAGAGTCGATCGATCATGAGAATAAGGCTTACTCTTTCTGTGGGACGGTTGAGTACATGGCTCCAGAGGTGGTGAATCGAAGAGGACACACATACAGCGCTGACTGGTGGTCTTATGGCGTACTCATGTATGAAATGCTGACAGGAACGCTGCCATTCCAAGGCAAGGACCGCAAGGAAACCATGACCATGATCCTAAAGGCGAAGCTTGGGATGCCTCAGTTTTTAAGTTCAGAAGCTCAGAGTCTCCTCAGGAGCCTTTTCAAACGAAACCCTACTAATAGATTAGGTGCTGGTCCAGATGGAGTTGAAGAGATAAAGAGACACCCATTTTATGTTTCTATTGACTGGAATAAATTATTTAGAAGAGAAAGTCACCCACCCTTCAAACCAGCCACTGGCAGACCAGACGACACATTCTACTTCGACCCAGAATTTACCGCAAAAACTCCCAAAGattctcCAGGTGTACCTCCTAGTGCCAATGCCAATCGACTTTTTAGAGGGTTTAGTTTTGTGGCCATCACTTCAGAAGAAGAATCTCAATCCCTGCCGAGCAACAGCATGTCATCTATAGTTCAGCAGCTCCACCGAAACGTGTCTCAGTTTAGTGACGCATATGAGGTGAAGGAGGATATCGGCATTGGTGCTTATTCCATCTGCAAACGCTGCATTCAGAAAAGCACAATGATGGAGTATGCAGTGAAGGTGTATGATGATGGCCGCACTGTGTATCTGGTGACGGAGCTGCTGAAAGGAGGCGAACTGCTGGATAAAATCCTCAGACAGAAGTTCTTCTCGGAGCGGGAGGCCTGTGCTGTGCTCCACACCATCACCAAAACTGTGGCGTACCTGCACGCTCAAGGCGTGGTTCACAGGGATTTAAAGCCCAGTAACATCCTTTATGTTGATGAATCTGGGAATCCCGAGTCCATCCGTATCTGTGACTTCGGCTTTGCAAAGCAGCTAAGAGCAGAAAATGGACTTCTGATGACGCCCTGTTATACTGCCAACTTTGTGGCCCCAGAGGTGCTGAAGAAACAGGGCTATGATGCGGCCTGTGATATCTGGAGTCTAGGTGTCCTTCTCTACACAATGTTAACTGGATTTACTCCATTTGCTAATGGCCCCGAGGATACGCCGGAGGAGATTCTGGCTAGAATCGGCAGCGGACAGTTTTCCCTCACAGGAGGATTTTGGAACTCTGTTTCTTGTCAGGCAAAGGATCTGGTATCAAAGATGTTGCATGTAGACCCTCATCAGAGACTCACTGCTGCACAGGTTTTAAAGCATCCCTGGATCACTCACAAAGACAAGCTCCCCAATTACCAGCTTAATAGACAGGACGCCCCACATCTGGTTAAGGGGGCGATGGCTGCCACATTCTCTGCTTTGAACAGAAACATTCCTCCTGTACTGGAGCCTGTCGGCTGTTCAATACTCGCTCAGCGCAGAGGAGTGAAAAAACTGACTTCCACTGCCTTATGAGCAGGAAAACCCTTCCACCTCCAACCCCGTGACCTCCAGCTCGGTCTGAGCACAGCCTGAATTGGGCTTGCTTGCTGCCTACAGTACCTTGCGTCCAGGCCTTAGAGCCGAGTGTAGATTCTGAGGACCCCTGGTGGACAACCCAAATCTTCCTTCACTGGTCACTGCGACTTCAAGCCTCCAAACGCAGTTCAATGAAGCCTTTTTTCCAAGGAGCAAATCATCCGATCGTATCAAGAGAAACAAACCAGATCTCAGTCTTTATTAAAAGCTACCACATTATTTTAGAAGATGATGACCAACTCTTGCGCCAAATCGTGCATCAAGCTGCAAAAAGCTCCAGTTCTATGGGGACATGTGTGTTCGTGTTTAATATTCAGATTCTGTTCCATTGTTCTCAATTATTTTACATCAAGATTGTATTTAACGAGAGAATATTTTGACATATTCACTCACTCTAAagttgttccaaatctgtaggAGTTTCCATTTGCTTCATCTTTTGTTGAGGATAAAACAAAGTGTTTAGAAGAATGTGGGTGTCCAGGCATTTAATGGTCCCCTTTAATGTCCATAGTATggataaaacatatgattgtgACATACTGGTTTGGAGCTACTTTAGAGTGAATAAAGGATTATTATAGAACAGATTCCACAACGAAAGACGCTCCAAACCATTATAGATGTGGTGTGTTAAATAAAAGGCTGCATGCATCCACCACAGAATTTTGAAaatcagaaagaaagaaaagacttGATGCAATTTTTAGTCTCACTGTTACGAGTTGTTCAAACAGAACTCCGAATTGAGTCAGAATTAAAAACagtttacagatttatttctctaaAA

Function

symbol description
rps6ka3b Predicted to enable ribosomal protein S6 kinase activity. Acts upstream of or within ossification. Predicted to be active in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Lowry syndrome; intellectual disability; and non-syndromic X-linked intellectual disability 19. Orthologous to human RPS6KA3 (ribosomal protein S6 kinase A3).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0001503 ossification biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004711 ribosomal protein S6 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-74 Predicted to enable ribosomal protein S6 kinase activity. Acts upstream of or within ossification. Predicted to be active in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Lowry syndrome; intellectual disability; and non-syndromic X-linked intellectual disability 19. Orthologous to human RPS6KA3 (ribosomal protein S6 kinase A3).

Ensembl:

ensembl_id ENSDARG00000057927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046419 True 3190 mRNA 0.46 21 24183752 24271629

Neighbor

gene id symbol gene type direction distance location
XLOC_023463 eif1axb coding downstream 15219 24164227 ~ 24168533 (-)
XLOC_023462 zgc:112982 coding downstream 20551 24101811 ~ 24163201 (-)
XLOC_023461 NA coding downstream 84873 24095316 ~ 24098879 (-)
XLOC_023460 lyz coding downstream 123120 24035863 ~ 24060632 (-)
XLOC_023459 zmp:0000000991 coding downstream 184855 23988970 ~ 23998897 (-)
XLOC_023465 pdha1b coding upstream 1742 24273371 ~ 24282427 (-)
XLOC_023466 NA coding upstream 144695 24416324 ~ 24503022 (-)
XLOC_023467 NA coding upstream 220574 24492203 ~ 24492517 (-)
XLOC_023468 NA coding upstream 282164 24553793 ~ 24695757 (-)
XLOC_023469 armc1 coding upstream 430151 24701780 ~ 24724284 (-)
XLOC_023665 dre-mir-735 misc upstream 13906332 38177961 ~ 38178027 (-)
XLOC_023451 NA non-coding downstream 540847 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 910393 23273242 ~ 23273359 (-)
XLOC_023448 NA non-coding downstream 965722 22878941 ~ 23218030 (-)
XLOC_023446 CT573489.1 non-coding downstream 1811652 22371986 ~ 22372100 (-)
XLOC_023471 NA non-coding upstream 529147 24800776 ~ 24829401 (-)
XLOC_023487 NA non-coding upstream 1479007 25750636 ~ 25754146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_06095005_06111764 RPS6KA3, RPS6KA3A, RPS6KA3B coding CI01000018 null 6094831 ~ 6111764 (-)