XLOC_023468


Basic Information

Item Value
gene id XLOC_023468
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24553793 ~ 24695757 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046863
CTTGTTTAAAAAAACCTCGGAAACTTTCATCTTCTCACTGTCTACTAATTAAAACACATGAATTAATATGAGCACTCAATGATTTGTATCTAAATGCAGACTGTCAGTTATCTTTTCTTTGCTGGTTTTCTGATGTAAACGTGATGTGTCACTCTGATTCATGCAGGAAAAGCTGGCGTGATTGAGCCACCGCTGCGGGAGCGTCTGACTGACAGGTGTTTGGCAGGTCAGGCCCTCTCTGTAGAGTCTGCCCTGCTTCAGGACACACTCCTGTCATCTCAGGTGAATCTGTGCACATCTAAAGCAGAGCCAGCAGGCCGGATAAAGAGCCCTCGTCCCACTCTCACATCAACAGTTGCGACCCAATAATGAGGACATCTGTTTTCATATGGCGCTTGACGCGTAGCACCAGAAATTTGATGTCATCCTGTCCAAAC
>TCONS_00046864
TTCTTGTTGTTTAATGCgctgtaatgttttgttttaaatctaGAGTCGTTACCTGGACACGAGAAGGTCAAAGATTTCCAGATCCAGAAATCAAAGCAGCTTTTCCAGTGGATCCTGTATTCTGGAGATAGATGGGAGGAAAAGCTGGCGTGATTGAGCCACCGCTGCGGGAGCGTCTGACTGACAGGTGTTTGGCAGGTCAGGCCCTCTCTGTAGAGTCTGCCCTGCTTCAGGACACACTCCTGTCATCTCAGGTGAATCTGTGCACATCTAAAGCAGAGCCAGCAGGCCGGATAAAGAGCCCTCGTCCCACTCTCACATCAAGTAGGTCTCTGAATAATATCTGGATTATGTGCTACTGGAGATATTGTGCAGTCAGCAAACACAACCATTTAATGGAGTTCAACCAAAAAGGAAGCTTCTGGGGTTATTTATTCAGTCCAAACTAGCATCAGGTGGATTTCTCTTTCagtaaaacattaagaagatgtGATCATTTATAAATACAAATCAATAGAAATCTGCAATTTGAGAGTCAAAAAAGA
>TCONS_00047197
GCAGTGTGGCTTCCTATCTAAACGATCACATTTAAGGACAAAGTGCATGTTTTGCCTTGTCATGTGCTTAAGTGTTTGATGACAGCTTTGTGAGGGCCGTTTGCAAGAGACTCAATGAGACTTAAATTGATTTAAGACCAATTCTCCAAGCTGCTTTACATGTCGACTCGTCCATACACCTTATGAACAGGAAAAGGATGGATTTTCTGTCATACCTTTGAACCAATAACCCTAAAAGGTGCTAAGCTAGGGAATCAACGGACGGATGATGCATCAAAAAAGTGTTCAGAGTCGTTACCTGGACACGAGAAGGTCAAAGATTTCCAGATCCAGAAATCAAAGCAGCTTTTCCAGTGGATCCTGTATTCTGGAGATAGATGGGAGGAAAAGCTGGCGTGATTGAGCCACCGCTGCGGGAGCGTCTGACTGACAGGTGTTTGGCAGGTCAGGCCCTCTCTGTAGAGTCTGCCCTGCTTCAGGACACACTCCTGTCATCTCAGGTGAATCTGTGCACATCTAAAGCAGAGCCAGCAGGCCGGATAAAGAGCCCTCGTCCCACT
>TCONS_00047198
GCAGTGTGGCTTCCTATCTAAACGATCACATTTAAGGACAAAGTGCATGTTTTGCCTTGTCATGTGCTTAAGTGTTTGATGACAGCTTTGTGAGGGCCGTTTGCAAGAGACTCAATGAGACTTAAATTGATTTAAGACCAATTCTCCAAGCTGCTTTACATGTCGACTCGTCCATACACCTTATGAACAGGAAAAGGATGGATTTTCTGTCATACCTTTGAACCAATAACCCTAAAAGGTGCTAAGCTAGGGAATCAACGGACGGATGATGCATCAAAAAAGTGTTCAGAGTCGTTACCTGGACACGAGAAGGTCAAAGATTTCCAGATCCAGAAATCAAAGCAGCTTTTCCAGTGGATCCTGTATTCTGGAGATAGATGGGAGGCTTCCTAAAGCAGACAAAGAAGAGTCGCTGGTCCACTGAACGCCTGCATTTCAAAGGCTTGGAAAGGCTTGTGGGGTTCACACTGAAGTAATCAGCCTTTCTGCTCGGCCTGTGCCAAAGAATTAGCCTGGGAAATTCACCAAAATGTGGGAACAGCTTGGGAACAGATTGATGCAGAGGGCTGAGAGAGACGAGAGAGGCTTAGACTGTATGTGTGCAGCGCGAGTCCATTCCAGAGCAAATACATGGAAAAGCTTCTCCTAAGTAACTCAGCTCCTCTGAGCAAGGCTGTCACGCTCTCTGCTGTGAAGGGTCTCGAGTGGTTAAAACCGACCTGCTCCCATAACCAGTGCCACATCTGAACTGATCATCTTTTTAGGGTGTTTTTACACTGTTTACAGCAAAAAATTGGAAATAATATCAGAAACATGAAGGAAGAATGGTTTCAGTGTATCATTGTCATGTAATTAATTGTAGAAAAGTCGAGTCCAAAATCgtctaaaccaggggttctcaactggtttggccatgggacccacatttttacatggtcatcaagcagcgacccaaatttttaggaactataatacaattttagaaattatacttaatttgtatttatttgttaacattaacaAGTAGTGACATACATCATAAGAAATttaccaagacttacaaataaacgctattttattgctgtca
>TCONS_00046865
GTTTGATGACAGCTTTGTGAGGGCCGTTTGCAAGAGACTCAATGAGACTTAAATTGATTTAAGACCAATTCTCCAAGCTGCTTTACATGTCGACTCGTCCATACACCTTATGAACAGGAAAAGGATGGATTTTCTGTCATACCTTTGAACCAATAACCCTAAAAGGTGCTAAGCTAGGGAATCAACGGACGGATGATGCATCAAAAAAGTGTTCAGTCGTTACCTGGACACGAGAAGGTCAAAGATTTCCAGATCCAGAAATCAAAGCAGCTTTTCCAGTGGATCCTGTATTCTGGAGATAGATGGGAGGCTTCCTAAAGCAGACAAAGAAGAGTCGCTGGTCCACTGAACGCCTGCATTTCAAAGGCTTGGAAAGGCTTGTGGGGTTCACACTGAAGTAATCAGCCTTTCTGCTCGGCCTGTGCCAAAGAATTAGCCTGGGAAATTCACCAAAATGTGGGAACAGCTTGGGAACAGATTGATGCAGAGGGCTGAGAGAGACGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046863 False 437 lncRNA 0.46 2 24553793 24598475
TCONS_00046864 False 545 lncRNA 0.43 2 24597903 24691775
TCONS_00047197 False 560 lncRNA 0.47 3 24598134 24695757
TCONS_00047198 False 1087 lncRNA 0.42 3 24640773 24695757
TCONS_00046865 True 505 lncRNA 0.45 3 24641280 24695684

Neighbor

gene id symbol gene type direction distance location
XLOC_023466 NA coding downstream 50771 24416324 ~ 24503022 (-)
XLOC_023467 NA coding downstream 61276 24492203 ~ 24492517 (-)
XLOC_023465 pdha1b coding downstream 271366 24273371 ~ 24282427 (-)
XLOC_023464 rps6ka3b coding downstream 282164 24183752 ~ 24271629 (-)
XLOC_023463 eif1axb coding downstream 385260 24164227 ~ 24168533 (-)
XLOC_023469 armc1 coding upstream 6023 24701780 ~ 24724284 (-)
XLOC_023470 pde7a coding upstream 37550 24733307 ~ 24797455 (-)
XLOC_023471 NA coding upstream 105019 24800776 ~ 24829401 (-)
XLOC_023472 crhb coding upstream 151926 24847683 ~ 24881996 (-)
XLOC_023473 pdk3a coding upstream 248595 24944352 ~ 24959686 (-)
XLOC_023665 dre-mir-735 misc upstream 13482204 38177961 ~ 38178027 (-)
XLOC_023461 NA non-coding downstream 454914 24095316 ~ 24098879 (-)
XLOC_023451 NA non-coding downstream 910888 23383112 ~ 23642905 (-)
XLOC_023450 CT573302.1 non-coding downstream 1280434 23273242 ~ 23273359 (-)
XLOC_023487 NA non-coding upstream 1054879 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1335491 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1536943 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1658939 26354696 ~ 26369185 (-)

Expression


Co-expression Network