XLOC_023469 (armc1)


Basic Information

Item Value
gene id XLOC_023469
gene name armc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24701780 ~ 24724284 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046425
AATGGCCAAATAAACCGGACCAGAACAGTTGGTCACACACAATTTTAACTTCGTTTACTGTCGTCCTCATATCCAGTCTGGTTTCCGTCAGCAGTTGATTTGTCGGTGGTTTTGGATCCAGCAACTGGACAGGAATCATCCGAAGCGAGGAGCGTCCTGGGCGTGTTTGCTCTTGGAGCGGTGTGTTTTCTGTGCATGGCCCTTGGAGTGGGAGCAGCATGAGCGGGGAGCCTGATGCCTTGGCTGTGGTGAATCAGCTGAGGGACTTAGCTGCCGACCCCCTCAACAGGAGAGTTATAGTTGAAGATCAGGGCTGCTTCTCCGGCCTCATCCTCTTTCTCGACCATCCCAATCCTCAAGTCGTCTACTCCGCACTCTTGGCGGTGCGTTACCTGGCAGAATGCCGTGCCAACCGGGAGAAGATGAAGGGCGAGCTGGGAATGATGCTGAGCCTGCAGAACGTCATGCAGAAAGGCACGTCTCCAGGAGAAACCAAGCTGCTGGCCTCTGAGATCTACGAGATCCTGCAGAACTCCAGCAGTGCAGAGGCTGAACAGGCAGAAGCCGGAGCCTCCTGTAGAAGAAAAGCCCAGTTCTTCCTGGGCGCAACCAACAAACGGGCCAAAACTGTGGTGCTTCAGATTGATGGGCTTGATGATTCGTCTCGGAGGAGTCTTTGTGAGGAGGCTCTGCTGAAGATTAAAGGAGTCATCAGTTTTACCTTTCAGATGGCCGTGAAGAGATGCGTGGTCAGAATCCGCTCAGACCTGAAGGCAGAGgcCTTGGGAACTGCTATAGCTTCAACCAAAGTCATGAAGGCACAGCAGGTTGTGAAAGGGGAAGATGGAGCAGAGCTTGTAATCCCATTCCAGGAAGACTCGGACGTGGTTGTGGAGCAGAATCTGAATTTGCCGGATTATCTGCCGACTGCCGAGTGCATCTCGCAATAAACTTACAGCCCTGTTCCAACTTCACAAAAAAACGCCACGAGCGGCGGCAGTAAACGGTACGCGATCAAAACCCGCTCCTGAAACCTGCGTTTAGCGCTGCATACAAACCACACCAGACACTAAAACCAGAGAGCAGCCGGGAGACGTTCACAGAAAGTATTTTGTGTCTATTTGCTCTCTCTCCTACTCAccgtattgtttgtttgtttggtcagGAGAAGGTTCTCGAACGATCTGGGTTTCCCCGCTGGGTCGATGTTTTCTAAATTTCTACGATTTTTTGGGGTGATTTCGGATGTGGTCTAACCCTTCATCTCAGCTTTCTTGTacattttatacaacattttcttttgatatcctaatattactttattaattcATCTTTTCAAAGCatgatgcctttttttttttttttttgagatccACTTTCCTTCTGTGTGTGCCTTTTATATATTACGTAGCTTGTTTTCTTGGTTTTAAATTCTCTTCATCTGCTTCGACTGAAGACATGAGTTTTAGGTTTGTAATGTGTTGATGGTTCAGGGAACTGATTCCGTATGATAAATCTTTCACACTCCAGCACTGGCTGGTGTgcagtaataatattaatttgataaatgaataaataacggTTTGATGCCTCCAGATAAGGGAGGCGAAAATGGAATAGCTGTTACTTTATGTGTGTAGTACTAACCTGTTTTTGTTACAGCATGTGCCAAACACCAGATAACCTTCTTCACACTGTAGAAAAAATGGCTTGAATCCTTTGGGAATTgatattgttagttttttttttgggcctttcttaaagtgatagttcacccttaaattaaaattgtgtttaatttacttaccctcagCTTAAGATGTATGCCACTTCAATAGAAAATCAATTGAGGATTTT
>TCONS_00046426
TGGTCTAAATTCAGGAAGTGTTACACGGTCTGCTAAAAAAGCTCCGCAGATAATGGCCAAATAAACCGGACCAGAACAGTTGGTCACACACAATTTTAACTTCGTTTACTGTCGTCCTCATATCCAGTCTGGTTTCCGTCAGCAGTTGATTTGTCGGTGGTTTTGGATCCAGCAACTGGACAGGAATCATCCGAAGCGAGGAGCGTCCTGGGCGTGTTTGCTCTTGGAGCGGTGTGTTTTCTGTGCATGGCCCTTGGAGTGGGAGCAGCATGAGCGGGGAGCCTGATGCCTTGGCTGTGGTGAATCAGCTGAGGGACTTAGCTGCCGACCCCCTCAACAGGAGAGTTATAGTTGAAGATCAGGGCTGCTTCTCCGGCCTCATCCTCTTTCTCGACCATCCCAATCCTCAAGTCGTCTACTCCGCACTCTTGGCGGTGCGTTACCTGGCAGAATGCCGTGCCAACCGGGAGAAGATGAAGGGCGAGCTGGGAATGATGCTGAGCCTGCAGAACGTCATGCAGAAAGGCACGTCTCCAGGAGAAACCAAGCTGCTGGCCTCTGAGATCTACGAGATCCTGCAGAACTCCAGCAGTGCAGAGGCTGAACAGGCAGAAGCCGGAGCCTCCTGTAGAAGAAAAGCCCAGTTCTTCCTGGGCGCAACCAACAAACGGGCCAAAACTGTGGTGCTTCAGATTGATGGGCTTGATGATTCGTCTCGGAGGAGTCTTTGTGAGGAGGCTCTGCTGAAGATTAAAGGAGTCATCAGTTTTACCTTTCAGATGGCCGTGAAGAGATGCGTGGTCAGAATCCGCTCAGACCTGAAGGCAGAGgcCTTGGGAACTGCTATAGCTTCAACCAAAGTCATGAAGGCACAGCAGGTTGTGAAAGGGGAAGATGGAGCAGAGCTTGTAATCCCATTCCAGGAAGACTCGGACGTGGTTGTGGAGCAGAATCTGAATTTGCCGGATTATCTGCCGGAGGATGAGAGCCCGTCTCAGGAGCAGCACAAGGCAGTGACGCGCCTGGGCTCTGTTCAGGATGGCGTGAGCTGGCTAAACACGGCCGCTAACTTCCTGTCCCGCTCGTTTTACTGGTGACCCCACGGCTCCCGCATGACCCGCTCATTTTACAGCCCTGCCTCCACGCGCAAGACTGCCGAGTGCATCTCGCAATAAACTTACAGCCCTGTTCCAACTTCACAAAAAAACGCCACGAGCGGCGGCAGTAAACGGTACGCGATCAAAACCCGCTCCTGAAACCTGCGTTTAGCGCTGCATACAAACCACACCAGACACTAAAACCAGAGAGCAGCCGGGAGACGTTCACAGAAAGTATTTTGTGTCTATTTGCTCTCTCTCCTACTCAccgtattgtttgtttgtttggtcagGAGAAGGTTCTCGAACGATCTGGGTTTCCCCGCTGGGTCGATGTTTTCTAAATTTCTACGATTTTTTGGGGTGATTTCGGATGTGGTCTAACCCTTCATCTCAGCTTTCTTGTacattttatacaacattttcttttgatatcctaatattactttattaattcATCTTTTCAAAGCatgatgcctttttttttttttttttgagatccACTTTCCTTCTGTGTGTGCCTTTTATATATTACGTAGCTTGTTTTCTTGGTTTTAAATTCTCTTCATCTGCTTCGACTGAAGACATGAGTTTTAGGTTTGTAATGTGTTGATGGTTCAGGGAACTGATTCCGTATGATAAATCTTTCACACTCCAGCACTGGCTGGTGTgcagtaataatattaatttgataaatgaataaataacggTTTGATGCCTCCAGATAAGGGAGGCGAAAATGGAA

Function

symbol description
armc1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Orthologous to human ARMC1 (armadillo repeat containing 1).

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041212-33 Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Orthologous to human ARMC1 (armadillo repeat containing 1).

Ensembl:

ensembl_id ENSDARG00000013861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046425 False 1857 mRNA 0.46 8 24701780 24724233
TCONS_00046426 True 1842 mRNA 0.49 7 24702020 24724284

Neighbor

gene id symbol gene type direction distance location
XLOC_023468 NA coding downstream 6023 24553793 ~ 24695757 (-)
XLOC_023466 NA coding downstream 198758 24416324 ~ 24503022 (-)
XLOC_023467 NA coding downstream 209263 24492203 ~ 24492517 (-)
XLOC_023465 pdha1b coding downstream 419353 24273371 ~ 24282427 (-)
XLOC_023464 rps6ka3b coding downstream 430151 24183752 ~ 24271629 (-)
XLOC_023470 pde7a coding upstream 9023 24733307 ~ 24797455 (-)
XLOC_023471 NA coding upstream 76492 24800776 ~ 24829401 (-)
XLOC_023472 crhb coding upstream 123399 24847683 ~ 24881996 (-)
XLOC_023473 pdk3a coding upstream 220068 24944352 ~ 24959686 (-)
XLOC_023474 slc51a coding upstream 237615 24961899 ~ 24983047 (-)
XLOC_023665 dre-mir-735 misc upstream 13453677 38177961 ~ 38178027 (-)
XLOC_023461 NA non-coding downstream 602901 24095316 ~ 24098879 (-)
XLOC_023451 NA non-coding downstream 1058875 23383112 ~ 23642905 (-)
XLOC_023487 NA non-coding upstream 1026352 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1306964 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1508416 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1630412 26354696 ~ 26369185 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_06353801_06362659 ARMC1 coding CI01000018 null 6353722 ~ 6364041 (-)