XLOC_023475 (zdhhc20b)


Basic Information

Item Value
gene id XLOC_023475
gene name zdhhc20b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24989145 ~ 25004611 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046438
ACGGATGAGCGGATCACATCCCTCCCTTCCCGTCTTTTGTAGTCAAGGAAGAAGAAAGATGGCGCCTACACATGTATTGAGATGCTGCCAGAGGGGTCTGGCGTGGATACCGGTGATATTTATTGCTTTAGTGGTGTGCTGGTCGTATTATGCATACGTGGTGGAGTTGTGTCTACTTACTATTTCCAGCACTGGTGAAAAAATCGTCTACCTGGTGGTGTTTCACCTCTCATTCGTCATGTTTGTGTGGTCATACTGGAAAACTATCTTTACCAAACCAGCAAATCCTTCCAAAGAGTTCTGTCTACCCAAATCAGAGAAGGAACAGTATGAGAAAGAGCAGCGACCAGAAACTCAGCAGGAGATCCTGAAGAAAGTGGCCACCAGTCTGCCTCTCTATACCCGCACCGGGGCAGGAGCTATTCGATACTGTGACCGTTGCCAGGTCATCAAGCCAGACAGATGTCATCATTGTTCTGCTTGTGACATGTGTGTGCTAAAGATGGATCATCACTGTCCATGGGTGAATAATTGTGTGGGTTTCTCCAACTACAAGTTCTTCATCTTGTTCCTGACTTACTCGCTTGTTTACTGCTTGTTCATCGCAGCTTCTGTCCTCCAATACTTCATAAAGTTCTGGACAAGTGACCTGCCAGAGTCTCACGCCAAATTCCATGTcttgtttctcttttttgtgGCGGCCATGTTCTGCATCAGCATTCTTTCACTCTTCACTTACCACTTGTGGCTTGTGGGAAAAAACAGGTCCACCATAGAAGCATTCAGAGCCCCGGTCTTCAGAAATGGCCCTGATAAAAATGGATTTTCTCTGGGCTTCAGTAAGAACATCGCTCAGGTGTTCGGAGACGAGAAGAAGTACTGGCTGCTACCTGTCTTTACCAGTCAAGGAGATGGGCTTTCTTTTCCTACACGGTTGGTCACGATTGATCCAGAGCAGCCCACTGAATGTCTCCAGCCTGGTGGCTTGGATAAAGGTGCTGTAGAAGTATCTGCAGAGCAAACCAGTCCTCTCAGTGAATCTCAAAACCGTCTGCTAGGCAACGATTACCACAGTGAAGAGGATCACAAAGAGACAGAAGTCCTAAAGTCTGatgaaaGTGAGGCCATCACTATCTCCATTGAGAGTGAGTCATAGCCAGGACTAAAGCTGGTGAGGGGTGAGTCCTCTGTGGTCTCGTGCCTTTGACTCCCAATCCTGGGGACTGTTGAGGAGAATTGCAGCCATCAAAGCTGATGCCTTAAACAGCTCTTTTTCTTAAAAAGCCCCTGAACACTTTCCCTTGCCCACTTTCAATTGTTCCTCACATCTGTAaaattgccccccccccccccccccaatcctCCTCCATTCAACTATAGTAGCTGCGCTCTTTCAACAAAGAGTTTTGCACGCATGTCTTTTTACATTCATCATTTTTGCACAGAAAACTCCTTTGTTGCT
>TCONS_00046439
ATGGCGCCTACACATGTATTGAGATGCTGCCAGAGGGGTCTGGCGTGGATACCGGTGATATTTATTGCTTTAGTGGTGTGCTGGTCGTATTATGCATACGTGGTGGAGTTGTGTCTACTCGTCTACCTGGTGGTGTTTCACCTCTCATTCGTCATGTTTGTGTGGTCATACTGGAAAACTATCTTTACCAAACCAGCAAATCCTTCCAAAGAGTTCTGTCTACCCAAATCAGAGAAGGAACAGTATGAGAAAGAGCAGCGACCAGAAACTCAGCAGGAGATCCTGAAGAAAGTGGCCACCAGTCTGCCTCTCTATACCCGCACCGGGGCAGGAGCTATTCGATACTGTGACCGTTGCCAGGTCATCAAGCCAGACAGATGTCATCATTGTTCTGCTTGTGACATGTGTGTGCTAAAGATGGATCATCACTGTCCATGGGTGAATAATTGTGTGGGTTTCTCCAACTACAAGTTCTTCATCTTGTTCCTGACTTACTCGCTTGTTTACTGCTTGTTCATCGCAGCTTCTGTCCTCCAATACTTCATAAAGTTCTGGACAAGTGACCTGCCAGAGTCTCACGCCAAATTCCATGTcttgtttctcttttttgtgGCGGCCATGTTCTGCATCAGCATTCTTTCACTCTTCACTTACCACTTGTGGCTTGTGGGAAAAAACAGGTCCACCATAGAAGCATTCAGAGCCCCGGTCTTCAGAAATGGCCCTGATAAAAATGGATTTTCTCTGGGCTTCAGTAAGAACATCGCTCAGGTGTTCGGAGACGAGAAGAAGTACTGGCTGCTACCTGTCTTTACCAGTCAAGGAGATGGGCTTTCTTTTCCTACACGGTTGGTCACGATTGATCCAGAGCAGCCCACTGAATGTCTCCAGCCTGGTGGTGCAATTTCATCTCTCATCATTGTAGAATATTGTTTCTGcaaacaagccaaaaaaaaaaaaacagatgaataA

Function

symbol description
zdhhc20b Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; perinuclear region of cytoplasm; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC20 (zinc finger DHHC-type palmitoyltransferase 20).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-30 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; perinuclear region of cytoplasm; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC20 (zinc finger DHHC-type palmitoyltransferase 20).

Ensembl:

ensembl_id ENSDARG00000058178

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046438 False 1462 mRNA 0.47 13 24989145 25004611
TCONS_00046439 True 972 mRNA 0.46 10 24992425 25004553

Neighbor

gene id symbol gene type direction distance location
XLOC_023474 slc51a coding downstream 6098 24961899 ~ 24983047 (-)
XLOC_023473 pdk3a coding downstream 29459 24944352 ~ 24959686 (-)
XLOC_023472 crhb coding downstream 107149 24847683 ~ 24881996 (-)
XLOC_023471 NA coding downstream 159744 24800776 ~ 24829401 (-)
XLOC_023470 pde7a coding downstream 191690 24733307 ~ 24797455 (-)
XLOC_023476 nup58 coding upstream 3600 25008211 ~ 25030243 (-)
XLOC_023477 phldb2b coding upstream 87705 25092316 ~ 25166720 (-)
XLOC_023478 plcxd2 coding upstream 168859 25173470 ~ 25186895 (-)
XLOC_023479 hhla2b.2 coding upstream 231770 25236381 ~ 25244638 (-)
XLOC_023480 hhla2b.1 coding upstream 240335 25244946 ~ 25256670 (-)
XLOC_023665 dre-mir-735 misc upstream 13173350 38177961 ~ 38178027 (-)
XLOC_023468 NA non-coding downstream 293388 24553793 ~ 24695757 (-)
XLOC_023466 NA non-coding downstream 486123 24416324 ~ 24503022 (-)
XLOC_023467 NA non-coding downstream 496628 24492203 ~ 24492517 (-)
XLOC_023461 NA non-coding downstream 890266 24095316 ~ 24098879 (-)
XLOC_023487 NA non-coding upstream 746025 25750636 ~ 25754146 (-)
XLOC_023490 NA non-coding upstream 1026637 26031248 ~ 26032271 (-)
XLOC_023491 NA non-coding upstream 1228089 26232700 ~ 26236578 (-)
XLOC_023496 NA non-coding upstream 1350085 26354696 ~ 26369185 (-)
XLOC_023503 NA non-coding upstream 1637288 26641899 ~ 26648023 (-)

Expression


Co-expression Network