XLOC_002350 (stt3a)


Basic Information

Item Value
gene id XLOC_002350
gene name stt3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39212601 ~ 39234155 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004460
AAACGGTTTGCTTTAGAAACGTTTTCACTCATTATCAGCACgcaagtaaaatataatgtaattcaaaataataataattgttatgaaATGTGATAGCTCAAGTTTGGAAGTTGACTGTTGCGTGGACTCCACTGTGCTGACTGTCTTTCTCCCATTAGGACACGTCACATCTGGAGCGCCATGCGGAACTGGTCTCGACACGCTTGAGTGACATCTCAAAGACCAATCAGCGAAAGCCATTCTTCAGCAATCGTGACGTCGAGCCAATTAGCGATCTCTCTACGTGGATGGGCGGGGTTTAAACGCAGAGAGggttgtgtgtgaaagtgtggaAGGGCTGGAGTGAGTGAACCGCCGATGAATAAGACTGGTGTCAAGAGTTAGTCCTGCCTCCCGTGTGTAAAGATGACCAAGCTGGGCTTCCTGCGTCTGTCCTATGAGAAACAGGACACCCTGCTGAAGCTGCTCATCCTGTCTATGGCAGCCGTCCTGTCCTTCTCCACCAGACTGTTTTCTGTGCTTCGGTTCGAGAGCGTCATCCACGAGTTTGATCCgTATTTCAATTACCGGACCACTCGCTTCCTGGCAGAAGAGGGATTTTACAAATTCCATAACTGGTTCGATGATCGGGCTTGGTATCCACTTGGGAGGATTATTGGAGGCACCATCTATCCTGggTTGATGATCACATCAGCAGCTCTATATCACGTGCTGCACTTCTTCCACATCACCATTGACATCCGTAATGTCTGTGTGTTCCTCGCTCCTCTCTTCTCCTCCTTCACCGCTATCGTCACTTACCACTTCACCAAAGAGCTGAAGGATGCAGGCGCTGGGCTTCTGGCTGCCGCTATGATCGCAGTCGTGCCTGGATACATCTCCCGTTCTGTGGCAGGCTCTTATGATAATGAAGGAATTGCCATTTTCTGCATGCTGTTGACGTACTACATGTGGATCAAGGCAGTGAAGTCGGGCTCCATTTATTGGTCATCCATGTGTGCATTGGCATATTTTTACATGGTGTCCTCCTGGGGTGGTTACGTGTTTCTGATTAACCTCATTCCTCTGCACGTGCTGGTGTTGATGCTCACCGGCCGGTTCTCTCATCGCATCTATGTGGCCTACTGCACAGTCTACTGCCTGGGCACCATCCTCTCCATGCAGATCTCTTTTGTTGGATTCCAGCCCGTCCAGTCCTCTGAACACATGGCTGCTTTTGGAGTGTTTGGTCTGTGCCAGATTCACGCTTTTGTCGATTACCTGCGGAGCAAACTGAACGCGCAGCAGTTTGAGGTGTTGTTCAGGAGTGTCATTTCACTGGTCGGGATCATCCTGCTGTCTGTGGGCGGGTTGCTCATGCTGACAGGAAAAATCTCACCTTGGACTGGCCGTTTCTACTCTCTGCTGGATCCATCGTACGCCAAAAACAACATTCCCATCATCGCCTCTGTGTCTGAGCATCAGCCCACCACATGGTCCTCCTACTACTTTGACCTCCAGCTTCTGGTCTTCATGTTTCCAGTTGGCCTTTACTACTGCTTCAACAACCTCTCTGATGCCACGATTTTCATCATCATGTATGGCGTCACCAGCATGTACTTCTCAGCTGTGATGGTGCGTCTCATGTTGGTCCTCGCTCCAGTAATGTGCATCCTGTCTGGCATTGGAGTCTCTCAGGTCCTCACCACCTTCATGAAGAACCTGGATGTCAGTCGACCTGACAAGAAAACCAAGAAGCAGCAGGACTCCACCTACCCAATCAAGAACGAAGTGGCAAGTGGGATGATTCTAGTGATGGCGTTCTTCCTCATCACATACACTTTCCACTCCACCTGGGTGACCAGCGAGGCGTATTCGTCCCCCTCCATCGTGCTTTCTGCTCGCGGTGGCGACGGCAGCCGCATCATCTTTGATGACTTCAGAGAGGCTTATTACTGGCTCAGACACAACACACCAGAGGATGCTAAAGTGATGTCGTGGTGGGATTATGGGTATCAGATAACAGCGATGGCCAATCGAACGATTCTGGTTGACAATAACACTTGGAATAACACTCACATCTCCAGAGTGGGTCAGgCAATGGCCTCCACAGAGGAGAAAGCCTATGAGATTATGCGAGAGCTGGATGTGAGCTACGTCCTGGTGATCTTTGGCGGATTGACCGGATATTCATCTGATGATATTAATAAGTTCCTGTGGATGGTGCGTATCGGTGGCAGCACAGACACAGGGAGGCACATAAAGGAGCACGATTATTACACGCCCACTGGAGAGTTTCGTGTGGACCGCGAGGGCTCTCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGCTACTATCGCTTCGGCCAGGTCTACACCGAAGCCAAGCGTCCTCCTGGTTACGACAGAGTTCGTAATGCTGAGATTGGCAATAAGGACTTTGAGCTGGACGTGCTGGAAGAAGCTTATACTACAGAGCACTGGCTGGTCAGGATATACAAGGTTAATTTGAGCTCTTCTCTGCTGCTTTGAAGtcgcatgaactggaagctgcgacCACTTTTTTTATATTGTAACGCAGTTCCtagataaattattattaaatgagaaaacagtgggcgtggcttgttttttctactgcaagctgattggatgtagtaaagcagGCTTTTCATTCAGAAAGTTGGGGAAAAGTGTCTGGGGAAAGCTATTACAAcataacagactcctcctcctcactgtttctgcttgttgtcaaaactgacagctggaggggcgtggttaagtgtgttagccacgcccaatacctcaaacAAACGAAATCTGAGAATTTAATTGAAATCCAACAGGAAGAGCGTTTTCAGATTTTAGTTAAAGATTACACAGGAAAACTACTGCTattttcttagggtgctttcacacctgtgaatcgattcagttgttctgaaacagagattacattTGTTactttgttgctctttgctcttggagcggttcgctttcacactgcaaagtttctaatcgtaccaaaagagctaaaacaagtcacgtgcgagtaaactctcctcacattggtcagagtgtcagtgtcagggtttattttgcagcgtcccgctaagctatcaggagaggtggtggtttggtggtgattgacagggtgcatgcgcgcgacgtgtctgaggagagacgcggtggggaggggtgagaagggtgcgcgacgatgcctatttgaggaccgggagggagacgcgagataaccgggagatcatcactcgtttgcgggcatccggagactcgctaaacttcccgccctactcataattctctcttcatatagccgtaagcctattacatatccataaaacactgtgatataaccgcgctcggatcggatcgctttctcactacaatcgaaccgctccagggttcatttcaatcgagccgagaccacctcactcaggcgatctcggagcgattactttggcgtgaaacagagcgcgattgccctgttcacatatgccaaacgaac
>TCONS_00004461
TTTAAACGCAGAGAGggttgtgtgtgaaagtgtggaAGGGCTGGAGTGAGTGAACCGCCGATGAATAAGACTGGTGTCAAGAGTTAGTCCTGCCTCCCGTGTGTAAAGATGACCAAGCTGGGCTTCCTGCGTCTGTCCTATGAGAAACAGGACACCCTGCTGAAGCTGCTCATCCTGTCTATGGCAGCCGTCCTGTCCTTCTCCACCAGACTGTTTTCTGTGCTTCGGTTCGAGAGCGTCATCCACGAGTTTGATCCgTATTTCAATTACCGGACCACTCGCTTCCTGGCAGAAGAGGGATTTTACAAATTCCATAACTGGTTCGATGATCGGGCTTGGTATCCACTTGGGAGGATTATTGGAGGCACCATCTATCCTGggTTGATGATCACATCAGCAGCTCTATATCACGTGCTGCACTTCTTCCACATCACCATTGACATCCGTAATGTCTGTGTGTTCCTCGCTCCTCTCTTCTCCTCCTTCACCGCTATCGTCACTTACCACTTCACCAAAGAGCTGAAGGATGCAGGCGCTGGGCTTCTGGCTGCCGCTATGATCGCAGTCGTGCCTGGATACATCTCCCGTTCTGTGGCAGGCTCTTATGATAATGAAGGAATTGCCATTTTCTGCATGCTGTTGACGTACTACATGTGGATCAAGGCAGTGAAGTCGGGCTCCATTTATTGGTCATCCATGTGTGCATTGGCATATTTTTACATGGTGTCCTCCTGGGGTGGTTACGTGTTTCTGATTAACCTCATTCCTCTGCACGTGCTGGTGTTGATGCTCACCGGCCGGTTCTCTCATCGCATCTATGTGGCCTACTGCACAGTCTACTGCCTGGGCACCATCCTCTCCATGCAGATCTCTTTTGTTGGATTCCAGCCCGTCCAGTCCTCTGAACACATGGCTGCTTTTGGAGTGTTTGGTCTGTGCCAGATTCACGCTTTTGTCGATTACCTGCGGAGCAAACTGAACGCGCAGCAGTTTGAGGTGTTGTTCAGGAGTGTCATTTCACTGGTCGGGATCATCCTGCTGTCTGTGGGCGGGTTGCTCATGCTGACAGGAAAAATCTCACCTTGGACTGGCCGTTTCTACTCTCTGCTGGATCCATCGTACGCCAAAAACAACATTCCCATCATCGCCTCTGTGTCTGAGCATCAGCCCACCACATGGTCCTCCTACTACTTTGACCTCCAGCTTCTGGTCTTCATGTTTCCAGTTGGCCTTTACTACTGCTTCAACAACCTCTCTGATGCCACGATTTTCATCATCATGTATGGCGTCACCAGCATGTACTTCTCAGCTGTGATGGTGCGTCTCATGTTGGTCCTCGCTCCAGTAATGTGCATCCTGTCTGGCATTGGAGTCTCTCAGGTCCTCACCACCTTCATGAAGAACCTGGATGTCAGTCGACCTGACAAGAAAACCAAGAAGCAGCAGGACTCCACCTACCCAATCAAGAACGAAGTGGCAAGTGGGATGATTCTAGTGATGGCGTTCTTCCTCATCACATACACTTTCCACTCCACCTGGGTGACCAGCGAGGCGTATTCGTCCCCCTCCATCGTGCTTTCTGCTCGCGGTGGCGACGGCAGCCGCATCATCTTTGATGACTTCAGAGAGGCTTATTACTGGCTCAGACACAACACACCAGAGGATGCTAAAGTGATGTCGTGGTGGGATTATGGGTATCAGATAACAGCGATGGCCAATCGAACGATTCTGGTTGACAATAACACTTGGAATAACACTCACATCTCCAGAGTGGGTCAGgCAATGGCCTCCACAGAGGAGAAAGCCTATGAGATTATGCGAGAGCTGGATGTGAGCTACGTCCTGGTGATCTTTGGCGGATTGACCGGATATTCATCTGATGATATTAATAAGTTCCTGTGGATGGTGCGTATCGGTGGCAGCACAGACACAGGGAGGCACATAAAGGAGCACGATTATTACACGCCCACTGGAGAGTTTCGTGTGGACCGCGAGGGCTCTCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGCTACTATCGCTTCGGCCAGGTCTACACCGAAGCCA

Function

symbol description
stt3a Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

GO:

id name namespace
GO:0043687 post-translational protein modification biological_process
GO:0006486 protein glycosylation biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021015-3 Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

Ensembl:

ensembl_id ENSDARG00000104953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004460 False 3511 mRNA 0.49 17 39212601 39234155
TCONS_00004461 True 2071 mRNA 0.51 16 39212898 39231403

Neighbor

gene id symbol gene type direction distance location
XLOC_002349 ei24 coding upstream 4701 39199547 ~ 39207900 (+)
XLOC_002348 B3GAT1 coding upstream 33264 39164638 ~ 39179337 (+)
XLOC_002347 si:ch73-1a9.4 coding upstream 89388 39091353 ~ 39123213 (+)
XLOC_002346 NA coding upstream 124748 39084012 ~ 39087853 (+)
XLOC_002345 dscama coding upstream 238156 38775408 ~ 38974445 (+)
XLOC_002351 foxred1 coding downstream 14756 39248911 ~ 39273031 (+)
XLOC_002352 dcps coding downstream 49830 39283985 ~ 39294725 (+)
XLOC_002353 kcnj1b coding downstream 70267 39304422 ~ 39307819 (+)
XLOC_002354 NA coding downstream 95147 39329302 ~ 39393816 (+)
XLOC_002355 kirrel3a coding downstream 242277 39476432 ~ 39841419 (+)
XLOC_002344 CABZ01051877.1 non-coding upstream 452157 38749266 ~ 38760444 (+)
XLOC_002342 CU896636.1 non-coding upstream 528821 38683666 ~ 38683780 (+)
XLOC_002336 BX000451.4 non-coding upstream 664396 38548089 ~ 38548205 (+)
XLOC_002333 BX000451.1 non-coding upstream 723772 38488708 ~ 38488829 (+)
XLOC_002356 CR854987.1 non-coding downstream 526599 39760754 ~ 39760879 (+)
XLOC_002357 NA non-coding downstream 546406 39780561 ~ 39780849 (+)
XLOC_002359 NA non-coding downstream 674983 39909138 ~ 39917508 (+)
XLOC_002361 NA non-coding downstream 888219 40122374 ~ 40281002 (+)

Expression


Co-expression Network