XLOC_002352 (dcps)


Basic Information

Item Value
gene id XLOC_002352
gene name dcps
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39283985 ~ 39294725 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004465
TGGTTTGTTTCAGCGCGGTGAATCATGGCGGAAAGCGAGAACGGGAAAGACGGCAAAAGCGCTGCAAAAAGACCGAAAATAGATGCGGAAAACGAGAAAAGAAATGCTGATGAACAGTCCACCGATAACCCAGTGGTAGACTTCCAGCTCACCCGCATTCTACGCGATAATCCACGAGAAAAGAGCATCTTCATTcacggaaagGTGAAGGATCAGGATGCTGTTGTGATCCTGGAGAAATCTCCGTTCAGACAGGACTCGCTGCCTGAGTTACTAAAGACTAGTCAACTCAAGCTGGAGATGCAGAATGACGTGTATAGCACATACCAGCTGCACGCACCGCCACAACTCAATGAAATCAAAACAACAGTAATGTGCCCCGCCACGGAGAAGCATATTAAGAAGTATTTGCACCAGGAGGTTTTTCTGCTTGAAGAATCAGGTGAAGATTACCGCAACCTCACCTTACCATACATCAGCGGCCAGAGCTTCAGTGTGCAGTGGGTGTATAACATATTAGAGAAGAAAGCAGAGGCGGATCGGATTGTTTTCGAGGATCCAGACCCTGATGCTGGTTTCGTTTTGCTGCCTGATTTCAAATGGGACCAAAAGCAGCTACAGGACCTGTATTTGATTGCCATCGTCCACAGGAGGGACATAAAAAGTTTGCGGGATCTTACAGCAGAGCACCTGACGCTGCTCACAAACATTCGAAGTAAAGGAGAGGAAACCATTCAGAAGAAGTACGGCGTCCCTCCAAGCAAACTACGTGTGTATTTTCACTATCAGCCATCGTACTATCACCTCCACGTCCATTTCACCGCGGTGGAGTACAACGTTCCTGGTTGTGGAGTGGAAAGAGCTCACCTGCTTTCAGATGTCATCCAGAACTTGCAGTTGGATTCCAGTTACTATCACAACCGCAGCCTGTCGTTTCCACTGCGAGCTGATGATGGGCTGCTCCAACGGTTCAGAGAGGCCGGGAAAATTTAGTGATGTttgctacatttttttaaaagcttgtttcttaaagggacagatcaACCAGAAATTACCATTTAGTCATACTctattttattaaacatcaacTGGATATTGTTTCTGTAAGCGTGTTCTGCTGGATTTCTCAGAATATATGTGCGGTTTCTGAACTCTCCTTTTTTCTCCAAATGGGTTCATTTTAAGTCACTTAGAGTAAAACTGTTgagttttataattaattaatttatttttgtatccATTCAGCCGATTTCTGGATCTGGCgggatcacttttagcttagcttagcataggtcattgaatcggattagaccattagcatctcactcaaagtcCTCTGCTGTTACTTTATTTACTAAGACTGTCAAATTCACTATTTTAAAGGCCTATATGACTAGGATCTATGTTCTCATTTTGGCGTTATAATCAAGTAagtttgctgctgtaccatggcttcagcaggcacaatgatattacgcagTAGTCTCCAGCTGGATAACCACAGTAACAGCGACACATGATTTCATTTTCCTGCTGCAGcgaaagttccttgattattacgctggaattactagccatatcagcctagaaaatagcaagtttttttttttttttataatttttagatgtttttcaCCTTCAATTGGAAAGGACAGTGGAGGTTACAAACAGGAaagaatttacatttacatttagtcatttagcagacgcttttatccaaagcgagtTGGGAgaattgggagcagagagagaggggaagggtcggcaaagCACCTCTGTGCTACATGTCGACGTACTTTAACCACTACactattgttaaaaaaattgctaatgatctaatctgatttaataaaatatgttaagctaagctaaatctTGCTTAACTCTAGGTGAGCTAGAAACGTGGGGGggaaaaagtgaagtgttcctttaaagcaggggtgcccaaactcggtcttctagggctggtgtcctgtaaagtttagttccaaccccaatcagacacacctgggctggctaatcaagctcttactaagcttTCTTGAAACATCCCTTTtacgttgaggcaagttggagcataAATCTTTAATTGCTTTAAAGCAAGAGTTCATTTCCAGAATTAAATTTTTGTCGTCATTTGTTCACCATCCACTTTTTtaacaaacctgtttgagttttttattttttatttttttatttatgtttaaacatTTTGGTATCTTAACAGTTAAAATTTGGTATGGAAATCAATGAAGACCATCAACTGTAAGTGGAAGTCAGTGACCAATCATTCTGGAAGTTTACTGTACTCCTTAAAAGGATGAGTTTTGCTCATTTCGGGTCAATTCAATTATGTTTTTGACCAAACTGCAATACAAAAACACGTCACATGGTACATTGTTGGTACCATTGCAATACCATTcaaagcttaaagggatagttcaccctaaaatgaaattttcagttaatttactcacccttacaTCATCTGAAATGCAGTTGACTTTCTCTTTAAGACTTCTTGAAGACTATTTCAATAATGTAGGAAAAATTTCAGTAAATTaactgtaaatgttcattttttggatgaactgtctctttaatggtatTTGTTGCAGCTTTAGAATATCCAGAACAAGCTTTAGAGTAAATAATGAAGTAAGTtttttgttttgggtgaactaaccctttaatatcTCTTTAATTATTGAAAGCTTAAATTTACACTGCTTATCTGTTTTAAAACATGCATTATGGTCACTATAAAAGTCATTTTATGACATCTGCCAACAGTTTTTTGTCTAAAATATATGCTTGATTTTTGTAACtgtctgtttttttgttgttattaaagTACAGGTTGTTTTTAAA
>TCONS_00004466
AGCGCGGTGAATCATGGCGGAAAGCGAGAACGGGAAAGACGGCAAAAGCGCTGCAAAAAGACCGAAAATAGATGCGGAAAACGAGAAAAGAAATGCTGATGAACAGTCCACCGATAACCCAGTGGTAGACTTCCAGCTCACCCGCATTCTACGCGATAATCCACGAGAAAAGAGCATCTTCATTcacggaaagGTGAAGGATCAGGATGCTGTTGTGATCCTGGAGAAATCTCCGTTCAGACAGGACTCGCTGCCTGAGTTACTAAAGACTAGTCAACTCAAGCTGGAGATGCAGAATGACGTGTATAGCACATACCAGCTGCACGCACCGCCACAACTCAATGGTAGATCACAATATGTTGTTGAAATGTGATTTATTCCTCAGATTCAAAGCTGCATTTTCACCATCATTACTGCAGGCTTTAATGCCAAATGATACTTaaaaaaatcattgtaatatacatatttactgttcaagaaacattattattatcattattaaggtttTTATTGTATTGAAATATTTGCTCTTAAATAATATTCTTctgtgacattattattattatttttttttttaatgtcccaTGGTGATCACAAATTTCGAtatcttattaaaaatataatctttctGACCCC

Function

symbol description
dcps Predicted to enable RNA 7-methylguanosine cap binding activity and m7G(5')pppN diphosphatase activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger).

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0006397 mRNA processing biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040311-1 Predicted to enable RNA 7-methylguanosine cap binding activity and m7G(5')pppN diphosphatase activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger).

Ensembl:

ensembl_id ENSDARG00000009862

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004465 False 2871 mRNA 0.39 6 39283985 39294725
TCONS_00004466 True 636 lncRNA 0.38 2 39283996 39285617

Neighbor

gene id symbol gene type direction distance location
XLOC_002351 foxred1 coding upstream 10954 39248911 ~ 39273031 (+)
XLOC_002350 stt3a coding upstream 49830 39212601 ~ 39234155 (+)
XLOC_002349 ei24 coding upstream 76085 39199547 ~ 39207900 (+)
XLOC_002348 B3GAT1 coding upstream 104648 39164638 ~ 39179337 (+)
XLOC_002347 si:ch73-1a9.4 coding upstream 160772 39091353 ~ 39123213 (+)
XLOC_002353 kcnj1b coding downstream 9697 39304422 ~ 39307819 (+)
XLOC_002354 NA coding downstream 34577 39329302 ~ 39393816 (+)
XLOC_002355 kirrel3a coding downstream 181707 39476432 ~ 39841419 (+)
XLOC_002356 CR854987.1 coding downstream 466029 39760754 ~ 39760879 (+)
XLOC_002357 NA coding downstream 485836 39780561 ~ 39780849 (+)
XLOC_002346 NA non-coding upstream 196132 39084012 ~ 39087853 (+)
XLOC_002344 CABZ01051877.1 non-coding upstream 523541 38749266 ~ 38760444 (+)
XLOC_002342 CU896636.1 non-coding upstream 600205 38683666 ~ 38683780 (+)
XLOC_002336 BX000451.4 non-coding upstream 735780 38548089 ~ 38548205 (+)
XLOC_002333 BX000451.1 non-coding upstream 795156 38488708 ~ 38488829 (+)
XLOC_002359 NA non-coding downstream 614413 39909138 ~ 39917508 (+)
XLOC_002361 NA non-coding downstream 827649 40122374 ~ 40281002 (+)

Expression


Co-expression Network