XLOC_002353 (kcnj1b)


Basic Information

Item Value
gene id XLOC_002353
gene name kcnj1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39304422 ~ 39307819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004467
GAAAGGAGAACTTCATGGCCTGAACTTCATGCAGCACTGACGTTTGCTGGGACGTTTTCAGTTTGCAGCTGAAAGATGTTCCAGTTCATCCGGAAACAGCTTCACAATCACCTGGTGGAGCGCAAAATCAGGAGAACTCGCCTCGTCACCAAAGACGGCCACTGCAACATCAAATTTGGCACCACCGAATATCAAAGCCACTTCGCTTTCCTTAAGGACTTCTGGACTACATTCGTCGAAATCCACTGGTGTTTCGTAATCCTTTTATTTGCCGCAGCCTTCACCGGCAGCTGGTTCGTTTTCGGCCTGCTCTGGTATTCGCTTGCGAAAAGCAACGGAGACCTCTCTGAGTCTCAGCAGACGAAATGCATCGAGAACATTAACAGCCTCACGACTGCTTTCTTGTATTCTTTAGAGACCCAAACCACTATTGGATATGGCGGTCGGGCTCTGACGGGGCACTGTCCTGGCACCGTCGCTCTATTAATAATCCAATCCCTCATGGGCGCCATCATCAACTGCTTTATGTGTGGACTCATCCTGGCCAAGATCTCGCTCCCGAAGAGAAGAGCAAAGACTGTAGCGTTCAGCGAAACAGCCGTCATCCGTCTCTGGAAGGGGAATTTATGCCTGCAGATACGAGTTGCCAATCTACGGAAAACCCTACTGATTGGAAGCCACATTTACGGAAAGCTTCTGCGGACTACTATCACTCCCGAAGGTGAAACTATCATTCTGGATCAAGTAAATGTTGACTTTTCGGTGGATGCTGGGAAGGATAACTTGTTTTTTGTGTGTCCGCTTACTATTTATCATGTGATCGACAAATCCAGTCCGTTCGCGGACATGGCAGCGGATAACCTTCAGCTCCAGGACTTTGAGTTGGTGGTTTTTCTTGACGGCACGGCTGAATCTACAAGCTTGTCCTGCCAAGTGCGAACTTCTTACCTTCCCAGAGAGATCAAATGGGGTTACGTGTTTCTCCCCGTCATCTCTCGCACCAAAACTGGAAAATACCGTATCGATTTATCCAATTTTTCCAAAACGCAGCAAGCAGATACTCCACATTGTGCTTGCTGTTTTCATAACAAACATAACAAGGGGCTCATTCTCCACCGGCATGGAAGCGAAGGCATCGATAACCTGGGATTTGACGTTATTGACCTTCAGGACTCGGCTGATGTAACTGAGAAGGGCGATTAAGGCTTGAAGTGGCTGATTGAGAGGAATCGAGTGTGCTGTAAACATCCTGTAATATGGTGGCATTTAGTACTGCGAACGTTGAAGCCACATAAAAGGAGAGGGAAGAAGAGAAGCAGTCGCTTTAGACGCTTGTGTTTCCTAACAGACACTTTGGCAGCGCTCCAAAACCTAGCGAGCTGCTTGTGTAGACGGTGTTATTTGAGGTATTGTTTGTTTCTGAAATGAAGCCTGTTACTAAGTGTCGcaattagggttgggtatcgtttgggcaGATGTGACAGATTGATGCTTTTAGAATGGTACCGTGCCTGAAATGAGACGTAA

Function

symbol description
kcnj1b Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-9 Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

Ensembl:

ensembl_id ENSDARG00000002666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004467 True 1527 mRNA 0.47 2 39304422 39307819

Neighbor

gene id symbol gene type direction distance location
XLOC_002352 dcps coding upstream 9697 39283985 ~ 39294725 (+)
XLOC_002351 foxred1 coding upstream 31391 39248911 ~ 39273031 (+)
XLOC_002350 stt3a coding upstream 70267 39212601 ~ 39234155 (+)
XLOC_002349 ei24 coding upstream 96522 39199547 ~ 39207900 (+)
XLOC_002348 B3GAT1 coding upstream 125085 39164638 ~ 39179337 (+)
XLOC_002354 NA coding downstream 21483 39329302 ~ 39393816 (+)
XLOC_002355 kirrel3a coding downstream 168613 39476432 ~ 39841419 (+)
XLOC_002356 CR854987.1 coding downstream 452935 39760754 ~ 39760879 (+)
XLOC_002357 NA coding downstream 472742 39780561 ~ 39780849 (+)
XLOC_002358 smfn coding downstream 585620 39893439 ~ 39905253 (+)
XLOC_002346 NA non-coding upstream 216569 39084012 ~ 39087853 (+)
XLOC_002344 CABZ01051877.1 non-coding upstream 543978 38749266 ~ 38760444 (+)
XLOC_002342 CU896636.1 non-coding upstream 620642 38683666 ~ 38683780 (+)
XLOC_002336 BX000451.4 non-coding upstream 756217 38548089 ~ 38548205 (+)
XLOC_002333 BX000451.1 non-coding upstream 815593 38488708 ~ 38488829 (+)
XLOC_002359 NA non-coding downstream 601319 39909138 ~ 39917508 (+)
XLOC_002361 NA non-coding downstream 814555 40122374 ~ 40281002 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00329805_00330950 KCNJ1B, KCNJ1 coding CI01000197 null 328879 ~ 331191 (+)