G441915


Basic Information

Item Value
gene id G441915
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77269925 ~ 77270852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500149
acacaaCTATATATTTATACTCTGTTTACCTCTGTGGAGACATATATACATGTTAACATACAACTAAGACTCAAAGCTTTGAGATAACATACCTTCTCTATCAGGATCTGCAGCAAGCAACACTTAAAATACATTATACATAAGTAGGGTCTAATGCCAATTTTCCTAGTGTATTGGGTTTTCTATTTCTCTTCCAAACATATTTTCCTTCCAAAAAACATCCCCTTTCTCCTATTAAAAAAACATGTACTTCTATTCAAACCCCCCAAACACAAAAAGTAAAGACACACCAAAGAACATTCATGGATTCTATGACAGTGAGACTCTTTTGGCTTTGCATTAGCTTTCCATGGCACATGATATTACAACTGAAGCAACACAATACAACTCAACACAGTTGTTTGTCCCTCACAATCAATGTACTCATTGCTAACATGCATTATATACATCTAAGTGCCCATATGTCTatatacacagagagaaacaatAAATGTTTTACTTGAGATCACAAATAATCAGGATGAGTTCATTAATAAGTAGTAGAATGTTTGTCAGAACAAGTACACCATTAAGATTCCAGGATGGAGCCAGTATATGGCAATGTTTAAGGTCCAATGCAGATGCTTTTGTCTCAATATccaatcatttctgggtaacagttaagtaccttactgtgattgtctTAACGTAAAATggccaaaaagaaacaaaaatagcttcttagcaaagagcaatttctctaCCAATAATTTTGACTGTCTGGGTGTGGTCTGAGTTGAGAGGGGAACACTGAAAACAAGCTGTTATTGGCTGAGATGTTTGGAACTGTTTCCttttggtctattaactaatttactgcctggtgatgtcaccaggcaggacaaaactccatcccaacaaaacaggctgaaatttcaggcggtctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500149 True 928 lncRNA 0.36 1 77269925 77270852

Neighbor

gene id symbol gene type direction distance location
LOC118964533 NA coding upstream 548793 76716999 ~ 76721132 (+)
LOC110524591 LOC106560304 coding upstream 565788 76693530 ~ 76704137 (+)
LOC110524592 LOC106560305 coding upstream 585890 76663864 ~ 76684035 (+)
LOC110524594 NA coding upstream 613027 76647620 ~ 76656898 (+)
LOC110524593 LOC106560306 coding upstream 630447 76609969 ~ 76639478 (+)
brdt brdt coding downstream 154824 77425676 ~ 77441632 (+)
LOC110524602 ephx4 coding downstream 173129 77443981 ~ 77455616 (+)
LOC110524603 LOC106560312 coding downstream 228289 77499141 ~ 77512420 (+)
LOC110524606 cssa10h1orf146 coding downstream 241872 77512724 ~ 77515120 (+)
LOC110524610 LOC106584167 coding downstream 351432 77622284 ~ 77627211 (+)
G441911 NA non-coding upstream 7046 77262584 ~ 77262879 (+)
G441907 NA non-coding upstream 13677 77256015 ~ 77256248 (+)
G441906 NA non-coding upstream 13952 77255733 ~ 77255973 (+)
G441875 NA non-coding upstream 37396 77232291 ~ 77232529 (+)
G441862 NA non-coding upstream 44895 77224787 ~ 77225030 (+)
G441916 NA non-coding downstream 2104 77272956 ~ 77273237 (+)
G441921 NA non-coding downstream 11263 77282115 ~ 77282377 (+)
G441923 NA non-coding downstream 15734 77286586 ~ 77286836 (+)
G441925 NA non-coding downstream 17263 77288115 ~ 77288479 (+)
G441969 NA non-coding downstream 68936 77339788 ~ 77339991 (+)
G441903 NA other upstream 1159 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 2091638 75161317 ~ 75178287 (+)
G438719 NA other upstream 2493456 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 2499759 74729349 ~ 74770168 (+)
G437327 NA other upstream 3774841 73456301 ~ 73495084 (+)
G442273 NA other downstream 287478 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 974987 78245839 ~ 78288092 (+)
G445204 NA other downstream 2945626 80216478 ~ 80217090 (+)
G445211 NA other downstream 2964028 80234880 ~ 80235428 (+)
G446381 NA other downstream 4624952 81895804 ~ 81897781 (+)

Expression


Co-expression Network