XLOC_023561 (cngb3.1)


Basic Information

Item Value
gene id XLOC_023561
gene name cngb3.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31402894 ~ 31425799 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046587
CCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCTCCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCGTCTGCACCAGCTCCTGCTCCAGCGTCTGCACCAGCTCCTGCCCCAGCTGAAGATGGACCCCCTTCACCTCCAACTCCACCAGTCGTCTACTACAGATACACTGACGACCAACTGCGGGACATCGTCAAGAAAATGCGGGAGAGGACAGAGCTTTATAAAGATAAAATCGTCGACCCATACGCCTCGTCCCCAGAGCGCACACCACCCGTCACACCAGTTTACCGAAAGGAAGACTGGATCAGAAAACAAGAAGAGGAAAGAATAAAACGAGAAGAGGCTGAGCAGAAGAAAAAAGAGGATGACGCCAAGAGAGCTGCAGCGAAgaaggaaaaggaggagaaagaaaagaaggagaaagaggaaaaactgaaagcAGAGAAAGAGGCAGCTGATAAAGAGGCAGCTGAGGCCATGTTCCCTAAAATCAAATGCACATGTATAGACACCCTTCTCAAACCATTCGAAGACAAAATGGACTCGTATTTGGGTGCAACTATTGACCCTTTTACAGATCGGAGGTATATTAAATGGCTGAGCGTCGTCACAGTGGCGTTTAACTATAATGTTTGGTTGGCCACGGCACGCTTGTGTTTTCCCTACCACACTCCTGCCACCATTCCCTTCTGGATCCTATTCGATTTCCTGGCAGACCTGGTGAACGTCATCGACATCACTATGTTTCAGCCGCGGCTTCAGTTTGTGAAAGCAGGAGACATTATAAAAGACAGAGTACAGACAAAACAGAACTACAGAGAATCTGCCAGATTCCAGACAGACCTGATAAGCATCATACCGTTTGACTTGCTGTGTTTCCAGTTTGGATTTACCTCATTCTTTAGGCTAAACCGATTTATGCGGTATCAATCATTTTTTGAGTTCAGTGATCGTCTGGAAAGCATCATGGCTAAGGCGTATATCTGGAGAGTTGGCCGCACTACTGGATATCTGCTCTACTGTCTTCATATCAACTCCTGCCTCTATTATGTGGCATCAGAATATGAGGGTCTGGGCAGCAGTAGGTGGACATATGATGGACTAGGAAATGCATATCTGCGCTGTTATTACTTCGCCACTCGTACCCTGATCACTATCGGAGGTCTGCCGGAGCCCCATACGCTCTTCGAGATCGTCTTCCAGCTCGTCAACTTCTTTACTGGAGTCTTTGTCTTCTCCAGCCTGATTGGACAGATGCGAGACGTCATTGGAGCAGCTACGGCAGGTCAAACGTACTTCAGAGCATCTATGGATTCTTGCGTGGCGTATATGAACACCTACACCATTCCCAAACTGGTCCAGAGCAGAGTTCGCACCTGGTATAACTACACCTGGGACTCCCAGGGCATGCTGGATGAATCGGAGTTATTAGACAAGATGCCGCTGGTGATGAGAACAGCAATCGCTGTGGATATCAACCTCGCTACTTTCCAGAAGATTGACCTTTTCAAGgGTTGTGACAACCAGATGCTTGTGGACATGTTACTGCGTCTGAAATCCATTGTGTACCTACCTGGAGACTTTGTGTGCAAGAAGGGAGACATTGGGAGAGAAATGTACATCATCAAGGCTGGAGAAGTGCAGGTCATCGGTGGACCGGATAACAAGATTGTGTTTGTGACTCTGAAAGCAGGCTGTGTGTTCGGGGAGATCAGtctctTACAGTCGGCAAAAGATGGCGGAAACAGAAGAACTGCAAACGTTGCTGCTCATGGATTTGCCAACCTCTTCGTGCTGGATAAGAAAGATCTCAATGACATCCTGATCCATTACCCAGAGTCTCAAAAAGTCCTGGCCAAGAAAGGACGGAAACTGATGAAGGCCAAAGGCAAAGCTGCTCCTACAAAGGATGAAGGAGAGAAGAAGAAGGGATTGGCTTTGTTTGGACCCAAACCTCCCACTCCCAAAATGTTGCaatgttacgtttacacacacatccgcaaactacatgtaaatgcatcagcttttgcatcatactcactactcttgagtacttttgaaaggtcaaGGGTCAGGGTAAGggtttttactcatactttaaatagtaatatttacaacagatacttttactctactgcactacatttttag
>TCONS_00046588
CCACGATTGGTTGACTGTGCGAGAAggcttctgattggtcaataaACAAGGGAAATGGGCTGTTCCTGCGAGGGAATTAATCGAGCTTCGAGAATTAATTGAAGCAGCTTGGAGTTCACACATCGGCAGCAACAGGATAAGGAGAGTCAAAGGATTAATCTGGATGGGATCGCCATGTTCAGCACCTTAAAAACGATTTTTTGGCCCAGAGCTGCAGTAGCGGTCGCACAGAGCCCTGGACCACcagcttcaacaacaacaacacctcCGGTAAAGGAGGAAAAGCCAGAGCCAAAAAAAgatgaagaaaagaaagaagagaaaaaagaagAGCAAAAGCCCACTGAAACTGCTCCAGCGTCTGCACCAGCTCCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCTCCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCGTCTGCACCAGCTCCTGCTCCAGCGTCTGCACCAGCTCCTGCCCCAGCGTCTGCACCAGCTCCTGCCCCAGCATCTGCACCAGCTCCAGCATCTGCACCAGCTCCAGACCCTCCTAAACCAGCAGATCCAGCTAATCCTGGAGCAGAAACTGCTGGTGAAGATGGACCCCCTTCACCTCCAACTCCACCAGTCGTCTACTACAGATACACTGACGACCAACTGCGGGACATCGTCAAGAAAATGCGGGAGAGGACAGAGCTTTATAAAGATAAAATCGTCGACCCATACGCCTCGTCCCCAGAGCGCACACCACCCGTCACACCAGTTTACCGAAAGGAAGACTGGATCAGAAAACAAGAAGAGGAAAGAATAAAACGAGAAGAGGCTGAGCAGAAGAAAAAAGAGGATGACGCCAAGAGAGCTGCAGCGAAgaaggaaaaggaggagaaagaaaagaaggagaaagaggaaaaactgaaagcAGAGAAAGAGGCAGCTGATAAAGAGGCAGCTGAGGCCATGTTCCCTAAAATCAAATGCACATGTATAGACACCCTTCTCAAACCATTCGAAGACAAAATGGACTCGTATTTGGGTGCAACTATTGACCCTTTTACAGATCGGAGGTATATTAAATGGCTGAGCGTCGTCACAGTGGCGTTTAACTATAATGTTTGGTTGGCCACGGCACGCTTGTGTTTTCCCTACCACACTCCTGCCACCATTCCCTTCTGGATCCTATTCGATTTCCTGGCAGACCTGGTGAACGTCATCGACATCACTATGTTTCAGCCGCGGCTTCAGTTTGTGAAAGCAGGAGACATTATAAAAGACAGAGTACAGACAAAACAGAACTACAGAGAATCTGCCAGATTCCAGACAGACCTGATAAGCATCATACCGTTTGACTTGCTGTGTTTCCAGTTTGGATTTACCTCATTCTTTAGGCTAAACCGATTTATGCGGTATCAATCATTTTTTGAGTTCAGTGATCGTCTGGAAAGCATCATGGCTAAGGCGTATATCTGGAGAGTTGGCCGCACTACTGGATATCTGCTCTACTGTCTTCATATCAACTCCTGCCTCTATTATGTGGCATCAGAATATGAGGGTCTGGGCAGCAGTAGGTGGACATATGATGGACTAGGAAATGCATATCTGCGCTGTTATTACTTCGCCACTCGTACCCTGATCACTATCGGAGGTCTGCCGGAGCCCCATACGCTCTTCGAGATCGTCTTCCAGCTCGTCAACTTCTTTACTGGAGTCTTTGTCTTCTCCAGCCTGATTGGACAGATGCGAGACGTCATTGGAGCAGCTACGGCAGGTCAAACGTACTTCAGAGCATCTATGGATTCTTGCGTGGCGTATATGAACACCTACACCATTCCCAAACTGGTCCAGAGCAGAGTTCGCACCTGGTATAACTACACCTGGGACTCCCAGGGCATGCTGGATGAATCGGAGTTATTAGACAAGATGCCGCTGGTGATGAGAACAGCAATCGCTGTGGATATCAACCTCGCTACTTTCCAGAAGATTGACCTTTTCAAGgGTTGTGACAACCAGATGCTTGTGGACATGTTACTGCGTCTGAAATCCATTGTGTACCTACCTGGAGACTTTGTGTGCAAGAAGGGAGACATTGGGAGAGAAATGTACATCATCAAGGCTGGAGAAGTGCAGGTCATCGGTGGACCGGATAACAAGATTGTGTTTGTGACTCTGAAAGCAGGCTGTGTGTTCGGGGAGATCAGtctctTACAGTCGGCAAAAGATGGCGGAAACAGAAGAACTGCAAACGTTGCTGCTCATGGATTTGCCAACCTCTTCGTGCTGGATAAGAAAGATCTCAATGACATCCTGATCCATTACCCAGAGTCTCAAAAAGTCCTGGCCAAGAAAGGACGGAAACTGATGAAGGCCAAAGGCAAAGCTGCTCCTACAAAGGATGAAGGAGAGAAGAAGAAGGGATTGGCTTTGTTTGGACCCAAACCTCCCACTCCCAAAATGTTGCGTGCTTTTGGAGGATTCGGGAAAGGAGGTTTGCTGGACAAGCTGAAGGCTCAAGCAGcggaaaaaaagaattaaagagaTCTATCAGTCCATTCATCTgccagtccatccatccaccattacATAATCCATCAATTGCTCTATCTATATATCCatacatcaatccatcaatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctatcta

Function

symbol description
cngb3.1 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Human ortholog(s) of this gene implicated in achromatopsia 3 and color blindness. Orthologous to human CNGB3 (cyclic nucleotide gated channel subunit beta 3).

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090611-1 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Human ortholog(s) of this gene implicated in achromatopsia 3 and color blindness. Orthologous to human CNGB3 (cyclic nucleotide gated channel subunit beta 3).

Ensembl:

ensembl_id ENSDARG00000101225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046587 False 2157 mRNA 0.47 16 31402894 31422574
TCONS_00046588 True 2783 mRNA 0.47 18 31406374 31425799

Neighbor

gene id symbol gene type direction distance location
XLOC_023560 abcd3a coding downstream 70807 31310640 ~ 31332087 (-)
XLOC_023559 acp5b coding downstream 96170 31294019 ~ 31306724 (-)
XLOC_023558 alg14 coding downstream 179662 31201195 ~ 31223232 (-)
XLOC_023557 cnn3a coding downstream 208047 31170362 ~ 31194847 (-)
XLOC_023556 tlcd4a coding downstream 262538 31098534 ~ 31140356 (-)
XLOC_023562 cngb3.2 coding upstream 5091 31430890 ~ 31452923 (-)
XLOC_023563 NA coding upstream 29287 31455086 ~ 31458194 (-)
XLOC_023564 CABZ01029420.1 coding upstream 214513 31640312 ~ 31640427 (-)
XLOC_023565 NA coding upstream 283702 31709501 ~ 31717481 (-)
XLOC_023566 NA coding upstream 329448 31755247 ~ 31756351 (-)
XLOC_023665 dre-mir-735 misc upstream 6752162 38177961 ~ 38178027 (-)
XLOC_023554 NA non-coding downstream 321461 31040020 ~ 31081433 (-)
XLOC_023553 NA non-coding downstream 430031 30927688 ~ 30972863 (-)
XLOC_023552 NA non-coding downstream 491029 30903443 ~ 30911865 (-)
XLOC_023550 NA non-coding downstream 1026676 30329467 ~ 30376218 (-)
XLOC_023545 NA non-coding downstream 1480074 29921076 ~ 29922820 (-)
XLOC_023567 CT737162.3 non-coding upstream 360664 31786463 ~ 31786577 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_02819813_02826440 NA coding CI01000082 null 2818780 ~ 2826440 (-)