XLOC_023657 (crp2)


Basic Information

Item Value
gene id XLOC_023657
gene name crp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38082471 ~ 38085789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046693
TGCGCTGCATCCGAGCACACACACCTGCTTTAAAGCTTACGCAAATCAGCTGATAAACACCTTCAGTGAAACTGTGCAGTCAGACCTGGAGCAAGATGCTGCTTTTCTTCTGTCTGCTCTCTGTGACATTAGCGGCTGCTGAAGTGGGTCTCAGTGGTAAAACTCTTCTGTTCCCGACTGCTACTGACACCAGTTATGTAAAACTCAGTCCTAGAAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTGGCGACGGAGCTGCCGGCCAAAAGGGAGATCATCCTGTTCGCCTACCGCACACCTGACGATGATGAGCTCAATGTGTGGAGAGAGAAAGATGGCCGTTTCTCCGTCTATATTCAGTCTAGTAAAGATGCAGCCTTTTTCCGTCTTCATCCTCTCTCCACATTTCAGACTCACCTGTGCGTCACCTGGGAGTCTGCGACTGGTCTTACTGCCTTCTGGGTGGACGGTCAACGCAGTTTGCACCAAGTGTACAGGAAAGGTTACTCCATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCGGATTCATATGTAGGTTCCTTTAATGCAGCTCAGAGCTTTGTGGGAGAAATTACAGATCTGCAAATGTGGGACTATGTGCTGTCCGGCACTCAGATTAAAGCGGTGTACTATAACCAGGATAATCGTGTGAAGGGAAATGTGTTTGATTGGAACACCATCAAATATGATGTTACTGGAAATGTGCTTGTGGTTCCAGATAACTGACTGGATCAGCTGTAATGTGCACGATTaaccaaacaataaaacaattgtGAAAACTGCA
>TCONS_00046694
AGCAAGATGCTGCTTTTGTGCTTCTGTCTGCTCTCTGTGCATTTAGCGGCTGCTGAcgTGGGTCTCAGTGGTAAAACTCTTCTGTTCCCGACTGCTACTGACACCAGTTATGT

Function

symbol description
crp2 Enables cholesterol binding activity. Acts upstream of or within response to bacterium. Predicted to be located in extracellular region.

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5826 Enables cholesterol binding activity. Acts upstream of or within response to bacterium. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDARG00000056462

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046693 False 822 mRNA 0.48 2 38082471 38083378
TCONS_00046694 True 113 mRNA 0.50 2 38083094 38085789

Neighbor

gene id symbol gene type direction distance location
XLOC_023656 crp1 coding downstream 3210 38073223 ~ 38079261 (-)
XLOC_023655 si:ch211-248l17.3 coding downstream 69878 37999090 ~ 38012593 (-)
XLOC_023654 metrn coding downstream 126478 37941618 ~ 37955993 (-)
XLOC_023653 tmem204 coding downstream 204493 37854002 ~ 37877978 (-)
XLOC_023652 NA coding downstream 355522 37724974 ~ 37726949 (-)
XLOC_023659 crp3 coding upstream 6819 38092608 ~ 38097305 (-)
XLOC_023660 BX001030.1 coding upstream 13107 38098896 ~ 38099675 (-)
XLOC_023661 crp2 coding upstream 24010 38109799 ~ 38113208 (-)
XLOC_023662 si:ch211-234p6.9 coding upstream 35614 38121403 ~ 38122121 (-)
XLOC_023663 crp6 coding upstream 44815 38130604 ~ 38131381 (-)
XLOC_023665 dre-mir-735 misc upstream 92172 38177961 ~ 38178027 (-)
XLOC_023651 NA non-coding downstream 374420 37705626 ~ 37708051 (-)
XLOC_023644 CU469584.1 non-coding downstream 678005 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 787370 37289468 ~ 37295101 (-)
XLOC_023637 NA non-coding downstream 911547 37170317 ~ 37170924 (-)
XLOC_023667 NA non-coding upstream 112049 38197838 ~ 38215482 (-)
XLOC_023669 NA non-coding upstream 125314 38211103 ~ 38212927 (-)
XLOC_023670 NA non-coding upstream 155385 38241174 ~ 38252296 (-)
XLOC_023673 CU681836.1 non-coding upstream 310783 38396572 ~ 38397488 (-)

Expression


Co-expression Network